Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02527 ATGGGGAATTGCTTGGTGCTGCAGGAGAACGTTGTGAAGATCATGAAAACCGATGGGAAAATTCTTGAATACAAAATACCCATCAAAGTAGAGGAGGTTCTGATACAATTTTCTGGCCATGCAGTATCTGAATCACTCACAGTCCTGCGGTATCTTGAGCCAAACACAAAGTTGCTCAAAGGAAAGTTATACTACCTAGTTCCTCTGCCACCACCATCGCCAAAAACTAACAAGAAGGTGAGGTTCGCGGATCCAGAAGTTCAAGACATGAAAAAAAGTAACGTGGTTAGGATTAAGGTGGTTATTAGCAAGCAAGAGTTGCAGGATATGCTGCAGAGTGGAGGGTTTTCGGTTAGTAAGATGATGTCTCTTGTTCACGAGGACAAGGGTGAAGATTTGTCTCAAAAGAGTGAGGATGTCTCTCAAGGGTGGAAACCAGCGTTGGAAAGCATACCTGAAGTAAAGTAG 468 0.4338 MGNCLVLQENVVKIMKTDGKILEYKIPIKVEEVLIQFSGHAVSESLTVLRYLEPNTKLLKGKLYYLVPLPPPSPKTNKKVRFADPEVQDMKKSNVVRIKVVISKQELQDMLQSGGFSVSKMMSLVHEDKGEDLSQKSEDVSQGWKPALESIPEVK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02527 155 Pfam PADRE domain 1 153 IPR025322 -
Cca03g02527 155 MobiDBLite consensus disorder prediction 127 155 - -
Cca03g02527 155 PANTHER EXPRESSED PROTEIN 1 153 - -
Cca03g02527 155 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02527 Cca-Chr3 46521663 46522623 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02527 - - gmx:100500042 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02527 03 46521663 46522623 Cca03g02527 03 46521663 46522623 ECH