Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02525 ATGGCGATGAAGAAGTTGCTGAAAGTGAAGGGTTCTCCTCCTTGGATCCCCAACCTCCCTCTCCCCTCACCACCCCAAGACACATCCGTCTCCCCCACTCACTACGCCCGCTTCCTGGACTTCCTTAAGGCCCACTGGGCCCCACCTCTAAGCCCAGACACCCTCCTCCACTTTCTGAAATCCAAGCTCCACCACCACCCCTCCTTCTCCCGCTTCGACTTCCACCTCTTTACTTGGGCCACCACCCTTGACTCCTTCCGCCACACCCACTCCACCTTCCACTGGATGGCCCACACCCTCGCCGCCACCCACCGCCACCCAGAGCTCCGCACCCTCCTAACCCTAATCGCCGCCAACCCCTGCCCCTGCTCCCCCTCCATCTTCTCCTGCCCCCAAACCCAACCCATCTTCCGCACCGCCATCCACGCCTTCGCCAGATCCTCCAAACTCCACGACGCCGTTTCCGCATTCCACACCATGCGCAAATTAATCGACGGCAAACCAAACGTCGCCGTTTGCAACATTCTCCTCCACGCCTTCGTCAAAAACGCTAAACTCGATTGCGCCCTCCACTTTTACCGCGACATGGTGGATAAGTATAGGGTTAAGCCCGATGTGTTTACCTTCAACATTTTGATTAGCGGTTACTGTCGGAACTCGCAGTTCGCTTCGGCGTTGGAGATTTTCAACGAGATGGGGAAACTAGGGTGTTACCCCAACGTGGTTACTTTTAATACGTTGATTAGGGGAATGTTTAGAGAGGGGAACGTTGATGATGCCATTGGGATGGCTCGCGAGATGGTTGAATTAGGGTGTGGGTTTTCCAATGTTACTTGCGAGATTTTGGTTCAGGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCTTGTGTGTTGTTGCTTGAGTTTTCTGAGAAGAGGGTTTTGCCTGGAGGGTTTGATTGTTTTGCTTTGGTGGAGGTTTTGTGTGGAGAAGGGAATGTTATGAGAGCGTTGGAGCTTGTTTATGTGTTGTGGAATGCAGGGAGTGTTCCGAGTTTGGTTGCTTGCATTGCCATGGTTGATGGGTTGAGGGGGTTGGGGAAGACGGAGGAGGTGCGGAGGTTTGTGGAAAGAATGCTTGAGGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTTTGTTCTTCGTGATATTTGTGATATGGGGAGGACGGATGAGGCGAATAGATTGAGGTTGTTTGCTTTGAGCAAGGGTTTTGAACCGGATTGCATGACGTATAGAATTTTGGTCATGGGGTATATGGGAGAGGGAGGTAGAGAGGAAGGGGAGTTGCTAGTGAATGAAATGTTGGATAGGGGGTTTCTTCCTGATCTTGCTTCGTATAATGAATTGATGAGTGGATTAACTAATTGCCGACGCTCTACGAACCGGAAAGTGAAGAGTTTTGATCGCTGA 1434 0.5167 MAMKKLLKVKGSPPWIPNLPLPSPPQDTSVSPTHYARFLDFLKAHWAPPLSPDTLLHFLKSKLHHHPSFSRFDFHLFTWATTLDSFRHTHSTFHWMAHTLAATHRHPELRTLLTLIAANPCPCSPSIFSCPQTQPIFRTAIHAFARSSKLHDAVSAFHTMRKLIDGKPNVAVCNILLHAFVKNAKLDCALHFYRDMVDKYRVKPDVFTFNILISGYCRNSQFASALEIFNEMGKLGCYPNVVTFNTLIRGMFREGNVDDAIGMAREMVELGCGFSNVTCEILVQGLCKEGRVLQACVLLLEFSEKRVLPGGFDCFALVEVLCGEGNVMRALELVYVLWNAGSVPSLVACIAMVDGLRGLGKTEEVRRFVERMLEEGMVLDVVTFNFVLRDICDMGRTDEANRLRLFALSKGFEPDCMTYRILVMGYMGEGGREEGELLVNEMLDRGFLPDLASYNELMSGLTNCRRSTNRKVKSFDR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Cca03g02525 477 Gene3D Tetratricopeptide repeat domain 406 469 IPR011990 GO:0005515
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Cca03g02525 477 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 15 466 - -
Cca03g02525 477 PANTHER ATPASE EXPRESSION PROTEIN 3 15 466 - -
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cca03g02525 477 TIGRFAM PPR: pentatricopeptide repeat domain 242 272 IPR002885 -
Cca03g02525 477 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Cca03g02525 477 TIGRFAM PPR: pentatricopeptide repeat domain 172 206 IPR002885 -
Cca03g02525 477 TIGRFAM PPR: pentatricopeptide repeat domain 348 381 IPR002885 -
Cca03g02525 477 Pfam PPR repeat 172 199 IPR002885 -
Cca03g02525 477 Pfam PPR repeat 350 376 IPR002885 -
Cca03g02525 477 Pfam PPR repeat 138 162 IPR002885 -
Cca03g02525 477 Pfam PPR repeat 277 305 IPR002885 -
Cca03g02525 477 Gene3D Tetratricopeptide repeat domain 234 304 IPR011990 GO:0005515
Cca03g02525 477 Gene3D Tetratricopeptide repeat domain 50 233 IPR011990 GO:0005515
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 199 IPR002885 -
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cca03g02525 477 Pfam PPR repeat family 204 248 IPR002885 -
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cca03g02525 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Cca03g02525 477 Gene3D Tetratricopeptide repeat domain 305 405 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02525 136 465 Glycosyltransferase AT1G05670 30.211 3.11e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02525 - - gmx:100796880 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02525 03 46511161 46513090 Cca03g02525 03 46511161 46513090 ECH