Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02519 ATGTTTATCAAAGCCGCGTCGAATTTCGACACTGTGAGAATGGCAACCTGTTATACGCCTTCCAATGTTAGAAATTCCGCGGGGGTGCTGGCTGTTGTTGGAGGGAGAAAAATTTCTGAGAATCACGGTAACAGATCGTGCTTCTTCAGAATTCAAGAGAACAAGTACGTCTTTGGGAATCGAAAGTGTGGTTCGTTTCATGTGAAGTGCTCTGCCAATAATCCCCACAGCATCAGTCGCAAGGACCCTTTTTTGGATCTGCACCCTGAGGTTTCAATGCTTAGAGGAGAAGGAGGTAGTGCATTGAACAACCCTAGGCCTAAAAAGGATGTAACAAGTGGAAACGTGGTTGAGAGTTTAGAAGATGCGACGACTCCGAGTAACTACAATGAAGCTAAGATCAAAGTCATTGGTGTTGGTGGAGGCGGGTCAAATGCGGTCAACCGCATGATAGAGAGCTCCATGAATGGTGTGGAGTTCTGGATTGTCAATACTGATGTTCAAGCCATGAGAATGTCGCCGGTCACTCCTCAAAACCGGTTGCAAATCGGTCAGGAGCTTACACGAGGACTTGGCGCCGGTGGTAACCCTGAGATTGGTATGAACGCTGCCAAGGAAAGCAAGGAATCGATACAGGAGGCAGTTTATGGAGCTGATATGGTCTTTGTTACTGCTGGAATGGGTGGAGGAACTGGCACTGGCGGAGCTCCAGTTATTGCTGGTATCACAAAGACAATGGGTATACTGACTGTTGGTATTGTCACTACCCCTTTTTCATTTGAAGGACGAAGAAGGGCAGTTCAAGCACAAGAAGGAATTGCAGCCTTGAGAGATAATGTTGACACGCTGATAGTTATTCCAAATGACAAACTTCTGACTGCAGTTTCTCAATCTACCCCTGTGACTGAAGCATTCAACCTTGCTGATGATATTCTTCGACAAGGTGTTCGTGGTATATCTGATATTATTACGATACCAGGATTGGTGAATGTGGACTTTGCTGATGTTCGAGCGATAATGGCCAATGCAGGTTCTTCACTTATGGGAATAGGAACTGCAACTGGGAAAACAAGGGCAAGAGATGCTGCATTAAATGCTATCCAGTCACCTTTACTAGATATTGGTATAGAAAGGGCTACTGGAATTGTATGGAACATAACTGGTGGAAGTGATTTGACGTTGTTTGAGGTAAATGCTGCAGCAGAAGTTATATATGACCTTGTGGACCCCACTGCTAATTTAATATTTGGAGCAGTAATAGATCCATCCCTCAGTGGTCAAGTAAGCATAACATTAATTGCAACTGGATTCAAGCGTCAAGAGGAAAGTGAAGGGAGGCCCATACAGGCCAGTCAACTCACGCAAGGAGATACCATTGGTATCAGTAGAAGATCTTCCTCTTTCACCGATGGCAGTTTTGTTGAGATCCCTGAATTCTTAAAGAAGAAGGGGCGCTCACGTTATCCAAGAGCTTAA 1476 0.4492 MFIKAASNFDTVRMATCYTPSNVRNSAGVLAVVGGRKISENHGNRSCFFRIQENKYVFGNRKCGSFHVKCSANNPHSISRKDPFLDLHPEVSMLRGEGGSALNNPRPKKDVTSGNVVESLEDATTPSNYNEAKIKVIGVGGGGSNAVNRMIESSMNGVEFWIVNTDVQAMRMSPVTPQNRLQIGQELTRGLGAGGNPEIGMNAAKESKESIQEAVYGADMVFVTAGMGGGTGTGGAPVIAGITKTMGILTVGIVTTPFSFEGRRRAVQAQEGIAALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPIQASQLTQGDTIGISRRSSSFTDGSFVEIPEFLKKKGRSRYPRA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02519 491 PRINTS Cell division protein FtsZ signature 220 240 IPR003008 GO:0005525
Cca03g02519 491 PRINTS Cell division protein FtsZ signature 248 269 IPR003008 GO:0005525
Cca03g02519 491 PRINTS Cell division protein FtsZ signature 311 333 IPR003008 GO:0005525
Cca03g02519 491 PRINTS Cell division protein FtsZ signature 334 355 IPR003008 GO:0005525
Cca03g02519 491 CDD FtsZ_type1 144 436 IPR000158 GO:0003924|GO:0005525
Cca03g02519 491 TIGRFAM ftsZ: cell division protein FtsZ 125 448 IPR000158 GO:0003924|GO:0005525
Cca03g02519 491 Pfam Tubulin/FtsZ family, GTPase domain 133 294 IPR003008 GO:0005525
Cca03g02519 491 PANTHER CELL DIVISION FTSZ-LIKE PROTEIN 14 489 - -
Cca03g02519 491 SMART Tubulin_4 133 327 IPR003008 GO:0005525
Cca03g02519 491 Gene3D - 343 452 IPR037103 -
Cca03g02519 491 Gene3D Tubulin/FtsZ, GTPase domain 122 342 IPR036525 -
Cca03g02519 491 SUPERFAMILY Tubulin nucleotide-binding domain-like 132 330 IPR036525 -
Cca03g02519 491 ProSitePatterns FtsZ protein signature 2. 219 240 IPR020805 GO:0005525
Cca03g02519 491 Pfam FtsZ family, C-terminal domain 344 438 IPR024757 -
Cca03g02519 491 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 14 489 IPR045061 GO:0003924|GO:0005525
Cca03g02519 491 Hamap Cell division protein FtsZ [ftsZ]. 129 460 IPR000158 GO:0003924|GO:0005525
Cca03g02519 491 SMART Tubulin_C_4 329 446 IPR018316 -
Cca03g02519 491 SUPERFAMILY Tubulin C-terminal domain-like 326 440 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02519 Cca-Chr3 46474664 46480876 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02519 K03531 - gmx:100793382 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02519 03 46474664 46480876 Cca03g02519 03 46474664 46480876 ECH