Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02517 ATGGAGCACCTTCCTGTTGAAGTGATTGGTAACATATTATCTCTTCTCGGTTCTGCCCGAGATGTTGTAATTGCCTCTGCAACTTGCAAGAAATGGAGAGAAGCATGGCACAATCACCTTCACAGTCTTTCATTCAACTATTGTGATTGGCCCCTTTATCATGACTTAACCTCCAATAGGTTGGAAATACTCATCACTCAGACAATCTTTCAGACCAAGGCACTGCAGTTCTTGACCATTTTCATGGGTGATGAGCACGAGTTCTCCGCTGCGCCGGTCATTGCTTGGCTCATGTACACTAGGGATTCCCTGCGCCAATTGCGCTACAATGTCAGGACAACCCCTAGTTTCAATATTATTGAGAAATGCAGCAGGCAGAGGTTGGAGGTGTTGATCTTGGCTTGCAACTCTATCGCAGGCGTTGAGCCGAGTTATTTGAAGTTTCCTTGCCTGAAGTTGCTTTCTCTGAGTTTTGTTAGCATCTCGGCGTTGGATTTGAGCCTTCTGCTCTCTGCGTGTCCAAAGCTTGAGACTTTGGCTGTGGTTAGTCCGGAAATTGCAATGTCTGATTCGCAGGCTTCTGTGGATCTTAGCAGTGTTTCTTTGAAGGATTTCTTCATTGAATCGTTTAGTTCGGATAAGTTTATATTGGAGGCGGATTTACTTGAGAAACTTCATTTGAAAGATTGCACCTTTGAGGTTTTTGAGCTGATTGGAAAGGGGACATTGAAGGTGTTGAAGATTGATGATGTGAGTGTCATCCATCTTGATATTGGGGATGGCACAGAGAACCTTGAGATTATTGATGTCTGTAAATTCACAATTATGTGGCCAAAATTTTATCATATGATCTCAAAAGCATCAAAGTTATATAAGCTTAGGCTGTGGGGTGTTGTTTTTGATGATGAGGACGAGGTTGTTGATATAGAGACAATTTCTGGTTGCTTTCCTCGGCTGACACATTTGTCCTTAAGTTATGATTTAAGAGATGGTGTGCTTCATTATGGCTTGCAGGGTTTGTCTTGTTTGATGAATGTGGTGGTGTTAGAACTTGGGTGGACTGTGATTAGTGATCTTTTCTCGGTATGGGTAGCTGGACTTTTGGAAGGATGTCCCAATTTGAAAAAATTGGTTGTTTATGGTGTTGTTTCAGAGGTCAAAACACATGAAGAGTGCCAAATTCTTGCCAGATTCTCTGAATTCATTATCCAACTTGGAAGAAAATATAGGCATGTAAAGTTTGAGTTTGAATATGATTAG 1260 0.4167 MEHLPVEVIGNILSLLGSARDVVIASATCKKWREAWHNHLHSLSFNYCDWPLYHDLTSNRLEILITQTIFQTKALQFLTIFMGDEHEFSAAPVIAWLMYTRDSLRQLRYNVRTTPSFNIIEKCSRQRLEVLILACNSIAGVEPSYLKFPCLKLLSLSFVSISALDLSLLLSACPKLETLAVVSPEIAMSDSQASVDLSSVSLKDFFIESFSSDKFILEADLLEKLHLKDCTFEVFELIGKGTLKVLKIDDVSVIHLDIGDGTENLEIIDVCKFTIMWPKFYHMISKASKLYKLRLWGVVFDDEDEVVDIETISGCFPRLTHLSLSYDLRDGVLHYGLQGLSCLMNVVVLELGWTVISDLFSVWVAGLLEGCPNLKKLVVYGVVSEVKTHEECQILARFSEFIIQLGRKYRHVKFEFEYD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02517 419 Pfam F-box-like 2 38 IPR001810 GO:0005515
Cca03g02517 419 PANTHER F-BOX PROTEIN-LIKE 1 417 - -
Cca03g02517 419 PANTHER F-BOX/LRR-REPEAT PROTEIN 1 417 - -
Cca03g02517 419 SUPERFAMILY F-box domain 1 67 IPR036047 GO:0005515
Cca03g02517 419 Gene3D Ribonuclease Inhibitor 100 190 IPR032675 -
Cca03g02517 419 Gene3D Ribonuclease Inhibitor 191 400 IPR032675 -
Cca03g02517 419 Gene3D - 2 40 - -
Cca03g02517 419 SMART fbox_2 4 47 IPR001810 GO:0005515
Cca03g02517 419 SUPERFAMILY RNI-like 55 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02517 Cca-Chr3 46463264 46464983 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02517 - - gmx:100792331 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02517 03 46463264 46464983 Cca03g02517 03 46463264 46464983 ECH