Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02495 ATGGAATCGGCACTGCCACTGGCGGAGGATGACTTGGCCCTATCAACGAGCAGTCGCCGGAGCTGGACGTCGGTGAGTTTCAGGGAGGTGTGGACGGCGGCGCCGGACGTGTTCAACTTGAGTGGCCGCCACACGCACGAGGAGGACGAGCAAGAGCTCAAATGGGCCGCCATAGAGCGCTTGCCAACTTTTGAACGCATGAGAAAAGGCGTGCTCAAGCACGTGCTCGACGATGGTCACGTGGTCCTCCACCAAGTCGACGTTGCCAACCTTGGATTACACCACAAGAAGCTCTTAATCGACAACATACTTAAGATTGTCGAGGAAGATAATGAGAAATTTCTACACAGACTTAGAGATAGAGTCGATAGAGTGGGGATTAAAATTCCAAAGATTGAAGTTCGGTGTGAGAATTTATCGGTGGAGGGAGATGTGTATGTTGGGAGTAGAGCACTTCCTACCCTGCTTAATACTACTCTCAATGCTTTTGAGAGTGTTCTTGGAATGTTTCACCTTGCACCGTCTAAGAAGAGAGAAATCCAGATTCTTAAAAATATTAGTGGAATCGTGAAACCATCAAGGATGACTCTTCTTTTGGGTCCCCCATGTTCTGGGAAAACAACATTGCTTTTGGCGCTTGCAGGGAAGCTTGATCGTGATTTAAGGgcgtctgggagaatcacttactgtggccatgagctaaacgaatttgttgcacaaaagacatgtgcctacattagtcaacacgacgttcactatggagaaatgacagtgagagagacattagatttttcaggacgttgtctaggtgttggTACTAGGTATGAAGCGTTGGTGGAACTCTCAAGAAGGGAGAGAGAAGCAGGAATAAAGCCAGATCCTGAGATTGATGCATTCATGAAGGCTATAGCATTATCAGGCCAAAAAACCAGTTTGGTAACAGATTATGTTCTCAAGatacttgggttggacatatgtgctgacattatgcttggagatgacatgagaagaggcatctctggtggacagaagaagcgagtgacaacaggggagatgctggtaggacccgcaaaggcactatttatggatgaaatatcaacaggattagacagttccaccacctttcagatatgcaagttcatgaggcaaatggttcatataatggacgtgaccatggtgatttctcttctacaaccagcaccagagacgtttcaactctttgatgacatcatcctactttcagaaggtcaaattgtctaccaaggtccacgtgagaatgtgctacagttctttgagcacatgggtttcacgtgtccagagagaaaaggagttgctgatttcttacaagaagtaacatccaaaaaagaccaacaacaatattggtctagaaaagatgaacctcacagatatatttccgttcctgaatttgtaaaagcctttagttcatttaacattggagtgcaacttgctactgaacttggggttccctatgacaagaaccaaacccacccagctgcattagtgaaagacaagtatggtatatcaaactgggaactattaaaggcatgcttttcaagagaatggttacatatgaagcgcagttcttttgtatatatattcaagacatcaCAAATAACAATCATGTCTATTATTACCTTTACTGTATTCCTTAGAACAGAAATGTCAGTTGGCACTGTTCAAGATGGAGAAAAGTTCTAtggagcattattctttagtgtaataaatgtgatgtttaatgggatggcagaactatctatgactgtgtttaggcttcctgtcttttacaaacaaagggatttcatgttcttccctgcatgggcatttggtttgcctatatggattcttaggatccctctctccattatggaatcagggatatggattatccttacatattacacaattgggtttgctccttctgctagcagATTTTTCCGACAATTCTTGGCATTATTTGGCATTCATCAGATGGCGCTCTCTCTATTTCGGTTTGTTGCATCAGCTGGTAGAACACTAGTTGTTTCTAATACACTGGGTACCTTGACCTTGCAATTGATTTTTGTGCTAGGAGGTTTTATTGTTGCCAAAGATGACATTGAGCCATGGATGATATGGGGCTATTATATATCTCCTTTGATGTATGGTCAGAATGCCATAGTAATGAATGAATTCTTAGATAAAAGATGGAGTAAACCAAATACAGACCCTAGAATTAATGCACCTACAGTTGGAAAGGTGCTTCTCAAATCTAAAAGCTTCTATACAGAAGAATATTGGTTTTGGATCTGCATTGGAGCCTTGTTTGGGTTTTCTCTTCTCTTCAACCTCTTATTCATTGTTGCTTTAACTTACTTGAATCCTTTGGGTGATTCAAAAGCAGTCATTGCGGACGAAGGTGATAAAAAGAATATGAAGTTATCCTCTAGACAACATATCCTTGAAGGTATAGATATGGCAGTGAAAAGTTCTTCAGAAATTGCTAGTTCTTCGAACCAAGAACCAAGAGGAATGGTTCTACCGTTTCAACCTCTTTCACTTGCATTCAGTAATATTAGCTACTACGTAGATATGCCAGCAgaaatgaagagtcgaggaatcaataaagatcgacttcaactactacaagatgttagtggtgcttttagaccatgcatattgacagcacttgtaggtgttagtggtgctgggaagacaacccttatggatgtattggcaggaagaaaaacaggtggatacattgaaggaagtattagcgtctcaggttatccaaagaaccaatcaacatttgctcgagttagcggttactgcgaacagaatgacattcattctccacatgttactgtctatgaatcactcttattttccgcttggcttcgtcttccttcaaatgtaaatacacaaacacgaaagatgtttgttgaagaagttatggagttggttgagcttaacccaatcagagatgcagttgtgggtcttccaggagtggatggtctttcaacagaaaaaaggaaaaagcttactattgctgtagaattggttgcaaacccttcaattatcttcatggatgaaccaacatcgggctttgatgctagagctgctgctattgtcatgcgaactgtgagaaacacagtggacactgggagaaccgttgtgtgtacaattcatcaaccaagcatagacatttttgaagcttttgatgagcttttgttgatgaaaagaggaggacaagttatctatgctggacctcttggtcgccactcacataagctaatagaatattttgaagctattccaggggtgccaaaaattaaggatggtcataatcctgccacatggatgcttgacatcagctctacttcaatggaggctcgtcttgaggtagattttgcagagatttatgccaagtctaccctttaccgcaagaatcaagaacttattgaggagctcagtacctcagtaccagattctaaggacttgtatttcccaactaaatattcccaatcgtttcttgttcagtgcaaagcaaacttctggaaacaatattggtcttactggagataccctcagtataatgctgtccgattcttcatgactatagtcattggaatactgtttggtctgatattctgggataaagccaaaaaaacccataaacaacaagacttgatgaatcttttgggagccatgtacggggctgtgctttttcttggagccttgaatgcttcatcagtgcaaccagttgttgccattgaaagaactatcttctatcgtgaaagagcagcagggatgtactctgcattgccctatgcatttggtcagGTGGCAATAGAGGCAATTTATAACGTAATTCAAGCAACCATTTACTCTCTTATCCTTTTCCccatgattggttttgagtgggaggcaaaatacttcttttggttccactactatatattcatgtgctttatgtacttcaccttgtatgggatgatgattgtagccctaacaccgggtcatcaagttgctgccatttgtatgtctttcttcttgagtttctggaacttgttctctggctttatcattcctaggatgcaaattcctatgtggtggagatggtactattgggcttctcccgttgcatggacattatatgggcttattgcctcacaactgggtgacaagaatgcagaattggagataccaggtgctggaagcatgggaatgaaggaatttcttaaacaaaatttgggttttgaccatgacttccttccagctgttgctgttgctcatgcaggatgggttctcctcttcacgtttgtttttgcctatggcatcaaattcttgaatttccaaaAAAGATAG 4365 0.1558 MESALPLAEDDLALSTSSRRSWTSVSFREVWTAAPDVFNLSGRHTHEEDEQELKWAAIERLPTFERMRKGVLKHVLDDGHVVLHQVDVANLGLHHKKLLIDNILKIVEEDNEKFLHRLRDRVDRVGIKIPKIEVRCENLSVEGDVYVGSRALPTLLNTTLNAFESVLGMFHLAPSKKREIQILKNISGIVKPSRMTLLLGPPCSGKTTLLLALAGKLDRDLRASGRITYCGHELNEFVAQKTCAYISQHDVHYGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDPEIDAFMKAIALSGQKTSLVTDYVLKILGLDICADIMLGDDMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIMDVTMVISLLQPAPETFQLFDDIILLSEGQIVYQGPRENVLQFFEHMGFTCPERKGVADFLQEVTSKKDQQQYWSRKDEPHRYISVPEFVKAFSSFNIGVQLATELGVPYDKNQTHPAALVKDKYGISNWELLKACFSREWLHMKRSSFVYIFKTSQITIMSIITFTVFLRTEMSVGTVQDGEKFYGALFFSVINVMFNGMAELSMTVFRLPVFYKQRDFMFFPAWAFGLPIWILRIPLSIMESGIWIILTYYTIGFAPSASRFFRQFLALFGIHQMALSLFRFVASAGRTLVVSNTLGTLTLQLIFVLGGFIVAKDDIEPWMIWGYYISPLMYGQNAIVMNEFLDKRWSKPNTDPRINAPTVGKVLLKSKSFYTEEYWFWICIGALFGFSLLFNLLFIVALTYLNPLGDSKAVIADEGDKKNMKLSSRQHILEGIDMAVKSSSEIASSSNQEPRGMVLPFQPLSLAFSNISYYVDMPAEMKSRGINKDRLQLLQDVSGAFRPCILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISVSGYPKNQSTFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLPSNVNTQTRKMFVEEVMELVELNPIRDAVVGLPGVDGLSTEKRKKLTIAVELVANPSIIFMDEPTSGFDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLIEYFEAIPGVPKIKDGHNPATWMLDISSTSMEARLEVDFAEIYAKSTLYRKNQELIEELSTSVPDSKDLYFPTKYSQSFLVQCKANFWKQYWSYWRYPQYNAVRFFMTIVIGILFGLIFWDKAKKTHKQQDLMNLLGAMYGAVLFLGALNASSVQPVVAIERTIFYRERAAGMYSALPYAFGQVAIEAIYNVIQATIYSLILFPMIGFEWEAKYFFWFHYYIFMCFMYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFSGFIIPRMQIPMWWRWYYWASPVAWTLYGLIASQLGDKNAELEIPGAGSMGMKEFLKQNLGFDHDFLPAVAVAHAGWVLLFTFVFAYGIKFLNFQKR 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02495 1454 Pfam Plant PDR ABC transporter associated 736 802 IPR013581 -
Cca03g02495 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 440 IPR027417 -
Cca03g02495 1454 Pfam ABC-2 type transporter 398 469 IPR043926 GO:0140359
Cca03g02495 1454 Pfam ABC-2 type transporter 1062 1129 IPR043926 GO:0140359
Cca03g02495 1454 Pfam ABC transporter 183 365 IPR003439 GO:0005524
Cca03g02495 1454 Pfam ABC transporter 881 1033 IPR003439 GO:0005524
Cca03g02495 1454 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 440 IPR003439 GO:0005524
Cca03g02495 1454 SMART AAA_5 192 417 IPR003593 -
Cca03g02495 1454 SMART AAA_5 890 1082 IPR003593 -
Cca03g02495 1454 Gene3D - 169 473 IPR027417 -
Cca03g02495 1454 Pfam ABC-2 type transporter 1179 1391 IPR013525 GO:0016020|GO:0140359
Cca03g02495 1454 Pfam ABC-2 type transporter 519 731 IPR013525 GO:0016020|GO:0140359
Cca03g02495 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 876 1090 IPR027417 -
Cca03g02495 1454 CDD ABCG_PDR_domain2 850 1088 IPR034003 -
Cca03g02495 1454 PANTHER ATP-BINDING CASSETTE TRANSPORTER 22 1454 - -
Cca03g02495 1454 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 22 1454 - -
Cca03g02495 1454 Gene3D - 867 1100 IPR027417 -
Cca03g02495 1454 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 853 1105 IPR003439 GO:0005524
Cca03g02495 1454 CDD ABCG_PDR_domain1 172 422 IPR034001 -
Cca03g02495 1454 Pfam ABC-transporter N-terminal 109 157 IPR029481 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02495 Cca-Chr3 46219732 46228612 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02495 K08711 - gmx:100786482 2623.58