Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02494 ATGGCTTCGATGATGTCAAAGAGTGCGAGAAGAAAAAATGGGCGGAGTTGGCCCTCTGAGACGTGGATGGAATCTACCCCTTCAGGTGTGTTCAACACAAGAAGTAGACACATCGAAGAGGATGATGAAGATGATCTCAAATGGGCCTTGATCGAACGCTTACCCACCTTGGATCGCGTGAGGAAAGGGATGCTCAGAGTAGTTCTTGATAATGGTAAGGTTGAGTTTTGTTCGGTTGATTTCAACAATCTTGGGTTACAGGACAAGAAGCTGTTACTAGAGAGTGTACTAAAGTTCGTGGACGATGATAATGAAAAATTCTTACGTAGACTCAGAGACAGAATTGATAGGGTGGGAATTGAAATTCCAAAAATAGAAGTCAGATACGAGAAAGTATCTGTGGAGGGAAATGTACATTTTGGAACTAGAGCACTTCCTACCCTGCTTAATGCCACCCTCAACACTTTTGAGAGGATTCTTGAATTGTTCCGCCTCGCACCTTCCAAGAAAAAAAAGATTACTATTCTTAAAGATGTTAGTGGAATCGTCAAACCTTCAAGGATGACCCTACTACTAGGCCCGCCAGGTGCAGGGAAAACAACATTACTACTAGCACTTGCAGGGAAGCTTGACCCGGAATTAAAGgtctctgggaaaatcacttattgtggccatgaactaaatgaatttgttgctaaaaaaacttgtgcctatattggtcaacatgaccttcactacggagagatgacagtgagagagaccttagatttttcagggcgttgtctaggagttggCACAAGGTATCATATGGTGGAAGAACTTTTACGTCGGGAGAAACAAGAAGGAATCAAGCCGGATCCTGAGATTGATGCATTTATGAAGGCTACAGCCATATCGGGTCAAAAACACAATTTGCAAACAGATTATGTTCTCAAGatacttggattggatatttgtgctgatattatggttggtgataacatgagaaggggtatctctggtggacaaaaaaagcgtgtcacaacaggggaaatgctagtaggaccagcaaaggcactttttatggacgaaatatcaacagggttggatagttcaaccacttttcaaatatgcgagttcatgaagcaaatggttcatataatggatggaaccatggtgatttctcttctacagccagcaccagagacatttgaactatttgatgacattatcctactttcagacggtcatattgtttaccaaggtccccgtgaacatgtgctagagttctttgaaaacatgggtttcaaatgtccaccaagaaagggagttgctgactttttacaagaagtaacatctaagaaagatcaaccacagtattggtttagaaatgatgaaccttatagatatgtttcagttcctgagtttgcggagtccttccaatcgtttcacattggagaacaacttgcaacagagtttaaggttccttatgataagagacaaacccatcgtgctgccttagttaaagacaaatatggtatatcaaatatggaactactgaaggcatgtttctcaagagaatggttgcttatgaaacgcaacatgtttctctacgtctATAGGATATCACAGTTAATAATCTTATCTATTTTAGGCTTTACTGTGTTCCTTAGAACTAAAATGCCAGTGGGATCTGTTGAAGATGGAAATAAGTTCTTtggagcactatttttttctctagtgaacatgatgttcaatggcttctcagaacaagccatgattgtttccaggcttcctgtgttttacaaacaaagggatttcatgttctaccctggatgggcattcgggttacccatatggattctcgggatccctatttcctttctagaaacaggaatatggactgtgctcacatactacacaattggttttgctccTTCAGCTAGCAGATTTTTCAAACAATTCTTGGCATTGTTTGGCATTCATCAGATGTCTGTCTCTCTATTTCGGCTCGTTGGTGTAGTTGGTAGATCAAATGTTGTTGCCAATATACTGAGTGGCTTGACTTATCAACTAGTATTTTTGCTTGGAGGATTTATTGTTGCCAAGGATAATATCAAACCATGGATTTCATGGGGATATTATGCTTCTCCTATGATGTATGGTCAGACTGCTATTGTAATAAATGAATTTTTAGATGAAAGATGGAGTAAACCAAATACGGACCCTAGAATAGATGAACCAACAGTTGGGAAAGTACTTCTCAAGGCTAGAGGCTTTTACCGTGATGAATATTGGTTTTGGATATGCATTGGAGCCTTGTTTGGGTTTGTTCTTCTTTTCAACATTCTCAGCGTTGTTGCATTAACTTTTATGAATGCTATTGGCAATTCAAAAGCATTCATTACAGATGAAGATGACGAGAAGAGTGGAAATTCAATCTCCAGACAACATGCCACTGAAGGTATAGATAAGGAAATGAGAAATGTTTCTCGTCaaggaagaacaggaatggtcctgccatttcaacctctttcacttgcattcaatcatgtggagtactatgtagacatgcctagcgaaatgaaaagtcaaggaataaacgatgatagacttcaactactacatgatgccagtggtgcatttaggccaggcgtattgacagcacttatgggtgttagtggtgctgggaaaacaacccttatggatgtgttggctggaagaaaaacaggtggatacattgaaggaagtattaacatctcgggttacccaaagaaccaagcaacatttgctcgtgttagtggttattgtgaacagaatgacattcattctccaaatattactgtatatgaatcactattattttcagcatggcttcgccttccttcagatgtaaatgaacaaacgcgaaagatgtttgttgaacaagttatggaattggttgagcttaacacaatcagaaatgcactagtgggtcttccaggagtggatggcttatcaacagaacaaaggaaaaggcttactattgctgtagaattggttgccaacccttcaattatcttcatggatgaaccaacatctggccttgatgctagagctgctgctattgtcatgcgaactgtgagaaacacagtggacactgggagaaccgttgtgtgcacaattcaccaaccaagcatagacatttttgaagcttttgatgagttatttttgatgaaaagaggaggacaagttatttatgctggacctcttggtcatcattcacataagctcatagaatatttcgaatgtattgaaggtgttccaaaaatcaaggatggctataatcctgccacatggatgcttgaggttaccactgcttcaattgaggctcaacttggcatagattttgtggagatttatgctaactctactctctaccaaaggaatcaagagcttatcaaagagctcagtactccaccagtaggttccaatgacttgagcttcccatccaaatattcccaatcattctttgttcagttgaaagcttgtttttggaaacaatattggtcctattggagaaatcctccgtacaatgccgttcgatacttcttcacaatagtccttgggatactctttggtctaatcttctggaaaaaagccaaaaatatcaaaaagcaacaagatttattagattttttaggatccatgtactctgctgtgatgttccttggaaccatgaacactatgggagtgcaacccatagttgacatagaaagaactgtattgtatcgtgaaaaagcggcggggatgtattcaacattgtcctatgcaattagtcaggtgttaatagaggcaatttataacgccattcaatcggtcatctattgtctcattatgtactccatgatggggttagaatggaaggcagcgaaatttttttcgttcttgtacttcatggtcatgtgtttaatctactacacattatatggaatgatgattgtttccctaaccccgagttaccaaatagcttccgtttgcaattccttattcttgagcgtctggaacgtcttttctggctttatgattcctaggacggaaattcctatatggtggagatggtactattgggctactcctaattcttggacactctatggccttgttgcctctcaacttggtaatgaaaatgcacaagtggaaatcccaggagctgaaaatatagaactgaaagaacttattaagaaaaactttggttatgagtatagcttcctcccagtggttattgttgttcacttgggttgggttctccttttcatgtttgtttttgcttatggcataaaattcctcaacttccaaaAAAGATGA 4326 0.1338 MASMMSKSARRKNGRSWPSETWMESTPSGVFNTRSRHIEEDDEDDLKWALIERLPTLDRVRKGMLRVVLDNGKVEFCSVDFNNLGLQDKKLLLESVLKFVDDDNEKFLRRLRDRIDRVGIEIPKIEVRYEKVSVEGNVHFGTRALPTLLNATLNTFERILELFRLAPSKKKKITILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALAGKLDPELKVSGKITYCGHELNEFVAKKTCAYIGQHDLHYGEMTVRETLDFSGRCLGVGTRYHMVEELLRREKQEGIKPDPEIDAFMKATAISGQKHNLQTDYVLKILGLDICADIMVGDNMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICEFMKQMVHIMDGTMVISLLQPAPETFELFDDIILLSDGHIVYQGPREHVLEFFENMGFKCPPRKGVADFLQEVTSKKDQPQYWFRNDEPYRYVSVPEFAESFQSFHIGEQLATEFKVPYDKRQTHRAALVKDKYGISNMELLKACFSREWLLMKRNMFLYVYRISQLIILSILGFTVFLRTKMPVGSVEDGNKFFGALFFSLVNMMFNGFSEQAMIVSRLPVFYKQRDFMFYPGWAFGLPIWILGIPISFLETGIWTVLTYYTIGFAPSASRFFKQFLALFGIHQMSVSLFRLVGVVGRSNVVANILSGLTYQLVFLLGGFIVAKDNIKPWISWGYYASPMMYGQTAIVINEFLDERWSKPNTDPRIDEPTVGKVLLKARGFYRDEYWFWICIGALFGFVLLFNILSVVALTFMNAIGNSKAFITDEDDEKSGNSISRQHATEGIDKEMRNVSRQGRTGMVLPFQPLSLAFNHVEYYVDMPSEMKSQGINDDRLQLLHDASGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQATFARVSGYCEQNDIHSPNITVYESLLFSAWLRLPSDVNEQTRKMFVEQVMELVELNTIRNALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGHHSHKLIEYFECIEGVPKIKDGYNPATWMLEVTTASIEAQLGIDFVEIYANSTLYQRNQELIKELSTPPVGSNDLSFPSKYSQSFFVQLKACFWKQYWSYWRNPPYNAVRYFFTIVLGILFGLIFWKKAKNIKKQQDLLDFLGSMYSAVMFLGTMNTMGVQPIVDIERTVLYREKAAGMYSTLSYAISQVLIEAIYNAIQSVIYCLIMYSMMGLEWKAAKFFSFLYFMVMCLIYYTLYGMMIVSLTPSYQIASVCNSLFLSVWNVFSGFMIPRTEIPIWWRWYYWATPNSWTLYGLVASQLGNENAQVEIPGAENIELKELIKKNFGYEYSFLPVVIVVHLGWVLLFMFVFAYGIKFLNFQKR 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02494 1441 Pfam ABC transporter 176 358 IPR003439 GO:0005524
Cca03g02494 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 157 433 IPR003439 GO:0005524
Cca03g02494 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 863 1077 IPR027417 -
Cca03g02494 1441 CDD ABCG_PDR_domain1 164 415 IPR034001 -
Cca03g02494 1441 Pfam ABC-2 type transporter 1049 1110 IPR043926 GO:0140359
Cca03g02494 1441 Pfam ABC-2 type transporter 391 443 IPR043926 GO:0140359
Cca03g02494 1441 MobiDBLite consensus disorder prediction 798 821 - -
Cca03g02494 1441 Gene3D - 855 1089 IPR027417 -
Cca03g02494 1441 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 30 1441 - -
Cca03g02494 1441 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g02494 1441 Pfam ABC transporter 868 1020 IPR003439 GO:0005524
Cca03g02494 1441 SMART AAA_5 877 1069 IPR003593 -
Cca03g02494 1441 SMART AAA_5 185 410 IPR003593 -
Cca03g02494 1441 CDD ABCG_PDR_domain2 837 1075 IPR034003 -
Cca03g02494 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 849 1092 IPR003439 GO:0005524
Cca03g02494 1441 Pfam Plant PDR ABC transporter associated 729 795 IPR013581 -
Cca03g02494 1441 PANTHER ATP-BINDING CASSETTE TRANSPORTER 30 1441 - -
Cca03g02494 1441 Gene3D - 162 462 IPR027417 -
Cca03g02494 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 432 IPR027417 -
Cca03g02494 1441 Pfam ABC-transporter N-terminal 102 151 IPR029481 -
Cca03g02494 1441 Pfam ABC-2 type transporter 1166 1378 IPR013525 GO:0016020|GO:0140359
Cca03g02494 1441 Pfam ABC-2 type transporter 512 724 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02494 Cca-Chr3 46178863 46210570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02494 K08711 - gmx:100790545 2442.15