Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02493 ATGGAAGATGAGGATAAATACAACATTAGCGAAGCAGCTAGCAGGTACAGACCAATTGAAGATGGGCAAGGTTCTGTTTCATCACCTGTAGATGTGAACATTCAGGCTAAGAAGACACCGGTGTCTGTTGGCAAGAAAGTAAAGATAGTTGGTGATGATGCAAAACCAAAGATCATTCCCTCACCTGGTGCCGGGCAGAAAATATATGAGATTGATCCAACTTTGCTGCCATACCGTGAGCATCTTGATTTCCGTTATGGACAATACAAAAGATTGCGTGATGAAATTAACAAGCATGAAGGTGGTCTGGATACATTTTCTCGTGGTTATGAAAAATTTGGCTTCACACGCAGTACAACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCATTAATTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTGATGACCAAGAATGAGTTTGGTGTGTGGGAGATTTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGATCCGCATGGATACTCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATCAAGTTTTCTGTACAGGCTCCTGGTGAAATTCCCTATAGCGGAATATACTATGATCCTCCAGAAGAGGAAAAATATGTCTTCAAACATCCACAGCCAAAGAGACCAAAATCACTTAGAATATATGAGTCACACATTGGAATGAGCAGTCCGGAACCAAAAATCAACACATATGTCAATTTTAGAGATGAAGTACTACCTCGCATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTATTATGCCAGCTTTGGGTATCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGATCTTAAGTCTCTGATAGACAGAGCCCATGAACTCGGTCTGCTTGTTCTGATGGATATTGTACACAGTCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATGGTCATTACTTCTATTCTGGGTCACGAGGTCACCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTGCTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGATGGGTTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGCAGGTAGCATTTACAGGAAATTACAGCGAGTATTTTGGTCTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGCTAATGATGTTATTCATGGGCTCTTCCCCGAGGCTGTTACAATTGGTGAAGATGTCAGTGGCATGCCAACTTTCTGCCTTCCTACACAAGATGGTGGGGTTGGCTTTGATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGCAAGATGAAGAATGGAAAATGGGTGATATTATTCACACACTTACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTACGCCGAAAGTCATGATCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGATTTTATGGCTTTAGATAGACCATCTACACCTCTTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACCATGAGCCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAACGAATTCGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTAATGGCAGAGTAATTCCTGGGAATAACTACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAGACTATCTAAGATACCGAGGGATGCAAGAATTTGATCAAGCCATGCAGCATCTAGAAGAAAAGTTTGGTTTCATGACTGCTGAGCACCAATACATTTCAAGGAAAAATGAAGGTGACAAAATGATAGTCTTCGAAAGGGGAAACCTCATCTTTGTCTTCAATTTTCATTGGAACAACAGCTATTCGGATTACAGAATTGGCTGCTTAACCCCTGGGAAATATAAGATTGTCTTGGATTCGGATGATGCCTTGTTTGGTGGCTTCAGCAGGCTCAACCACGCTGCTGAGTACTTCACCTCTGAAGGGTGGCATGATGACCGACCTCGATCCTTTCTTATCTATGCGCCTTCTAGAACAGCAGTGGTTTATGCCCTTGCAGCTGACGATGAACCAGCCCTTGCAGAtgaagttgaagtggaagttgaagttgaagttgaaCCAGAGCCAGTTGATCCTTGA 2316 0.4188 MEDEDKYNISEAASRYRPIEDGQGSVSSPVDVNIQAKKTPVSVGKKVKIVGDDAKPKIIPSPGAGQKIYEIDPTLLPYREHLDFRYGQYKRLRDEINKHEGGLDTFSRGYEKFGFTRSTTGITYREWAPGAKSAALIGDFNNWNPNADVMTKNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHIGMSSPEPKINTYVNFRDEVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDGHYFYSGSRGHHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGLATDVDAVVYLMLANDVIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLHMAIADKWIEILKKQDEEWKMGDIIHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMSLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGRVIPGNNYSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEEKFGFMTAEHQYISRKNEGDKMIVFERGNLIFVFNFHWNNSYSDYRIGCLTPGKYKIVLDSDDALFGGFSRLNHAAEYFTSEGWHDDRPRSFLIYAPSRTAVVYALAADDEPALADEVEVEVEVEVEPEPVDP 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02493 771 Pfam Alpha amylase, C-terminal all-beta domain 650 743 IPR006048 GO:0003824|GO:0005975|GO:0043169
Cca03g02493 771 SUPERFAMILY Glycosyl hydrolase domain 647 744 - -
Cca03g02493 771 PIRSF GlgB 13 752 IPR037439 GO:0003844|GO:0005978
Cca03g02493 771 Gene3D - 646 752 IPR013780 -
Cca03g02493 771 Gene3D Immunoglobulins 108 220 IPR013783 -
Cca03g02493 771 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2, CHLOROPLASTIC/AMYLOPLASTIC 22 743 - -
Cca03g02493 771 Pfam Alpha amylase, catalytic domain 261 333 IPR006047 GO:0005975
Cca03g02493 771 SUPERFAMILY (Trans)glycosidases 224 639 IPR017853 -
Cca03g02493 771 CDD AmyAc_bac_euk_BE 217 632 - -
Cca03g02493 771 Gene3D Glycosidases 72 641 - -
Cca03g02493 771 CDD E_set_GBE_euk_N 119 213 - -
Cca03g02493 771 SMART aamy 251 611 IPR006047 GO:0005975
Cca03g02493 771 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 112 195 IPR004193 GO:0004553|GO:0005975
Cca03g02493 771 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 22 743 IPR037439 GO:0003844|GO:0005978
Cca03g02493 771 SUPERFAMILY E set domains 106 215 IPR014756 -
Cca03g02493 771 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02493 Cca-Chr3 46149543 46173134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02493 54 748 Glycoside Hydrolase AT5G03650 84.460 0.0 1270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02493 K00700 - gmx:100816963 1468.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02493 03 46149543 46173134 Cca03g02493 03 46149543 46173134 ECH