Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02479 ATGTTGGGAACACATCACCTCCACCTGATAGCGATCCTCTTTCTCCTGCCATGCTCGTGCTCAAGTGCAAGTAGTTACATCCCACAAGAGCTTCACAAAGGCTTCACGGCGTCGCCGGAGTCTTCAACGGCGTCGTTTCAGGCAGTTCTGAGCGACCCAAGCGGCAACTTCTCTCTAGGGTTCCTCCGCGTGAACCAAAACCACCTGGCACTGGCCATCCTCCACGTGGCATCCTCAGAGCCATTCTGGCTGGCCAACCCAACCCACGCCGCCTCCTGGTCCCACACCACTCGCCTCTCCTTCAACGGCAGCCTCGTCCTCACGGATCCCGAAACGCGCGTTTGGTGGTCAACCGCCACAAACGGTGACCGCGCGCTTCTCCTCAACAACTCCAACTTGCAAATCCAAACCAGAGCCCAAGGGACTCCTCTCTGGGAGAGTTTTAATTTTCCCACAAATACCCTCGTCCAGGGTCAAAACTTCACCTCTCACATGACCTTGCTCTCTCTCCCTCCCAACGCTTTTTACTCTCTGCGGTTGGGCGACAATTTCATGGGACTATACGAGAACCGCCACTTCTTGTATTGGAAACACACAGCACTGGAAACAAAAGCGGAAATAAAAGAAGGACAGGGACCCATTTACGCGCGAGTCAACTCGGAGGGTTACCTCGGGATGTATCAAACAAACGATAAACTACCCGCGGATGTTCAGAAGTTCAACAGCTTCCAACAGCCAGTCACAGCGGCCTCGTTTTTGTTGGTGCGCTTGGAACCGGACGGGAACCTCAGAGGCTACTACTGGGACGGTTCCAACTGGCTGCTTAACTACCAGGCTATTACTGAAACCTGCGACCTCCCCCGCCCCTGCGGTTCCTACGGTTTGTGCACGCCTGGCGGCTCTGGCTGCTCCTGTTTGGATAACCGGACCCGGTTCGAACCGGGTGGGTGTTTCAATCATGTTAGTGGAGACCTGTGTGGTGGAAGAAAGAGTTACCGCGTGGTGAGAAGGAGCGGCGTGGAGCCACCGCATAAGGAGTTAGTTAGTCACGTGACGACGTCGTCTTTGGCGGAGTGTGAATTGTTGTGCCAGAATAACTGCAGCTGTTGGGGAGCCTTGTATAGCAACTCCACCGGGTTTTGTTACGTGTTGGATTACCCGATCCAGACCATGTTGGGTAGCGGGGATGGGTCCAAAGTGGGTTATTTCAAAGTTACAAAGGAGGAGCGCGGGAAGATGAATCGggtttgggttgtggtaacggttttggtggtggttgggattgtTATTATCGGGGGTGCAGTTTGCATGACGAGGTGGAAAAAGAGGAATGGGGTGAAGGAGGATGATTGGGCTTCGCCCGGCCCGTATAAGAATCTTGGATCGGCGAGTTTTAGATCCATTGAGATGTCCAGTAATGGGAAATGA 1428 0.5224 MLGTHHLHLIAILFLLPCSCSSASSYIPQELHKGFTASPESSTASFQAVLSDPSGNFSLGFLRVNQNHLALAILHVASSEPFWLANPTHAASWSHTTRLSFNGSLVLTDPETRVWWSTATNGDRALLLNNSNLQIQTRAQGTPLWESFNFPTNTLVQGQNFTSHMTLLSLPPNAFYSLRLGDNFMGLYENRHFLYWKHTALETKAEIKEGQGPIYARVNSEGYLGMYQTNDKLPADVQKFNSFQQPVTAASFLLVRLEPDGNLRGYYWDGSNWLLNYQAITETCDLPRPCGSYGLCTPGGSGCSCLDNRTRFEPGGCFNHVSGDLCGGRKSYRVVRRSGVEPPHKELVSHVTTSSLAECELLCQNNCSCWGALYSNSTGFCYVLDYPIQTMLGSGDGSKVGYFKVTKEERGKMNRVWVVVTVLVVVGIVIIGGAVCMTRWKKRNGVKEDDWASPGPYKNLGSASFRSIEMSSNGK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02479 475 Pfam S-locus glycoprotein domain 250 307 IPR000858 GO:0048544
Cca03g02479 475 Gene3D - 36 150 IPR036426 -
Cca03g02479 475 Pfam D-mannose binding lectin 83 162 IPR001480 -
Cca03g02479 475 Pfam PAN domain 348 385 IPR003609 -
Cca03g02479 475 PANTHER OS11G0149900 PROTEIN 36 462 - -
Cca03g02479 475 ProSiteProfiles PAN/Apple domain profile. 326 407 IPR003609 -
Cca03g02479 475 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 198 IPR036426 -
Cca03g02479 475 PIRSF SLG 2 421 IPR035446 -
Cca03g02479 475 ProSiteProfiles Bulb-type lectin domain profile. 35 148 IPR001480 -
Cca03g02479 475 PANTHER - 36 462 - -
Cca03g02479 475 SMART blect_4 41 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02479 Cca-Chr3 45974256 45976504 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02479 - - gmx:100812159 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02479 03 45974256 45976504 Cca03g02479 03 45974256 45976504 ECH