Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02472 ATGGCGGAGCACTTGGCATCGATATTCGGGACGGAGAAGGACAGGGTGAACTGCCCGTTCTACTTCAAGATCGGAGCTTGCAGGCACGGCGACCGGTGTTCTCGGCTCCACACCAAGCCCACAATTAGCCCAACGCTGGTTCTGTCCAACATGTACCAGAGGCCCGACATGAACATGAACATCATCACCAACCCTAATCAGCCTCAGCCCCAATCCCTCGACCCCGACAAGGTCCAAGATCACTTCGATGACTTCTACGAAGATCTCTTCGAGGAGCTCAGCAAGTACGGCCCCATTCAGAGCTTGAACATTTGCGACAATCTCGCCGATCACATGGTTGGGAACGTGTATGTTCAGTTTCGGGAGGAAGATCATGCTGCCAACGCCCTCATGAATCTCACTGGAAGATTTTATTCAGGTCGGCCCATCATTGTTGATTTCTCTCCTGTTACCGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTATTGCAACTTTATGCACTTAAAGAAGATTAGCAGGGATTTGAGAAGGAAATTATTTGGAAGAAATAGGCGATGGAATGGTCGCAGCGGAAGCAGAAGCCGGAGCCCTCCAAGGAATCGTAACCATGGGGAGCATTCACATGCTGGTCGTAGTTCTGGTAGAAGAGATTTTGACCGGCCCCATAGCCACCATGGTAGGAGGCCTAGAAGCCGTAGTCCTCGATATAGAGGAAAAAGAAGTAGAAGTCCTGTGGGCAGGGATAGGAGTCCCGTGAGAGAAAGTAGTGCAGAAAGGAGAGCTAAGATAGAGCAATGGAACAGGGAGAAGGAACAGGAGGATTCTGGTACCAAGAGCAATTTGAAAAGCAATGATTATCAAGAACAGAGTGTTGCACAAAATGGCAGTGAATCTGGGAACCATCAGATATAG 939 0.4909 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNMNIITNPNQPQPQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRKLFGRNRRWNGRSGSRSRSPPRNRNHGEHSHAGRSSGRRDFDRPHSHHGRRPRSRSPRYRGKRSRSPVGRDRSPVRESSAERRAKIEQWNREKEQEDSGTKSNLKSNDYQEQSVAQNGSESGNHQI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02472 312 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 PRINTS U2 auxiliary factor small subunit signature 79 94 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 PRINTS U2 auxiliary factor small subunit signature 107 129 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 PRINTS U2 auxiliary factor small subunit signature 134 158 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 PRINTS U2 auxiliary factor small subunit signature 169 181 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 SUPERFAMILY RNA-binding domain, RBD 81 153 IPR035979 GO:0003676
Cca03g02472 312 MobiDBLite consensus disorder prediction 207 229 - -
Cca03g02472 312 MobiDBLite consensus disorder prediction 230 249 - -
Cca03g02472 312 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Cca03g02472 312 SMART rrm1_1 45 146 IPR000504 GO:0003723
Cca03g02472 312 Gene3D - 43 149 IPR012677 -
Cca03g02472 312 CDD RRM_U2AF35B 44 149 - -
Cca03g02472 312 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Cca03g02472 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 143 IPR000504 GO:0003723
Cca03g02472 312 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Cca03g02472 312 SMART c3hfinal6 152 178 IPR000571 GO:0046872
Cca03g02472 312 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 177 IPR000571 GO:0046872
Cca03g02472 312 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Cca03g02472 312 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 300 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca03g02472 312 MobiDBLite consensus disorder prediction 288 312 - -
Cca03g02472 312 MobiDBLite consensus disorder prediction 250 287 - -
Cca03g02472 312 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 300 - -
Cca03g02472 312 SMART rrm2_1 71 146 IPR003954 GO:0003676
Cca03g02472 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 150 IPR000504 GO:0003723
Cca03g02472 312 MobiDBLite consensus disorder prediction 191 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02472 Cca-Chr3 45825592 45828623 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02472 K12836 - gmx:100783847 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02472 03 45825592 45828623 Cca03g02472 03 45825592 45828623 ECH