Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02460 ATGGGGGCCTCGCTGTCCAACCTTGGAAGCAACGGTTCCGCCGTCGCTCCGGGCCTCGGCGATATCCCGGAGGGTTGCGTCGCTCGCGTCTTCCTCCACCTCACTCCGCCGGAGATATGTAACCTCGCGCGCCTCAACCGCTCCTTCCGCGGCGCCGCCTCCGCCGACTCCGTCTGGGAAGCCAAGCTGCCTCCCAACTACCACGATCTCCTCCTTCTCATGCCTCCCGAGAGGCACCAACATCTCTCCAAGAAGAACATCTTCGCTCTCCTCTCTCGCCCTGTGCCGTTTGATCACGGCTACAAGGTACGCTACGCTACGCCctctctctctctctctctctctctctcAGTTCATGAATCCATATCGATGTACCTTTTGCAGGAAGTGTGGCTCGATAGGGTTACCGGTAGGGTTTGCATCTCCATTTCGGCCAAGGCCATGTCTATTACGGGAATTGATGACCGCCGATACTGGACTTGGCTTCCTACTGAAGAATCTAGGTTCAACACTGTAGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGGGGAGGTCAACTTCCCATTACCTGCTGATATTTATACTCTCTCCTTTAGGCTTCACCTTGGGCGATTTTCCAAGAGGCTTGGTCGACGTGTGTGCAATTATGAGCACACCCATGGTTGGGATATAAAACCAGTGAGATTTCAGCTGTCAACCATGGATGGTCAGCAAGCATCATTTGAGTGCTGCCTGGATGAAAATGAACCTGATGATGCACATGGCAATCATAAGCGCGGACATTGGGTAGATTACAAGGTGGGTGAGTTTATTGTCAGTGGATCAGAACCTACGACTAAAGTAAGATTCTCCATGAAACAGATTGATTGTACACACTCTAAAGATTAG 894 0.5011 MGASLSNLGSNGSAVAPGLGDIPEGCVARVFLHLTPPEICNLARLNRSFRGAASADSVWEAKLPPNYHDLLLLMPPERHQHLSKKNIFALLSRPVPFDHGYKVRYATPSLSLSLSLSVHESISMYLLQEVWLDRVTGRVCISISAKAMSITGIDDRRYWTWLPTEESRFNTVAYLQQIWWFEVDGEVNFPLPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVRFQLSTMDGQQASFECCLDENEPDDAHGNHKRGHWVDYKVGEFIVSGSEPTTKVRFSMKQIDCTHSKD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02460 297 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 103 - -
Cca03g02460 297 SUPERFAMILY F-box domain 17 88 IPR036047 GO:0005515
Cca03g02460 297 PANTHER F-BOX PROTEIN PP2-A15 1 103 - -
Cca03g02460 297 PANTHER F-BOX PROTEIN PP2-A15 128 296 - -
Cca03g02460 297 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Cca03g02460 297 Pfam Phloem protein 2 139 296 IPR025886 -
Cca03g02460 297 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 128 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02460 Cca-Chr3 45687594 45691892 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02460 - - gmx:100807328 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02460 03 45687594 45691892 Cca03g02460 03 45687594 45691892 ECH