Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02455 ATGGGAGTGGCAGTGGAAACATGGCAATGTGGCCTCCACTGCAGATCCTTAAACCCTTTCCTCTCTCCTCCCCACCCCAAGCCACCTTTCCGCCACAAACCCACCACCCTCCGGCTCCGCCACGCCACCCACCACTCCCTCCTCCACGCCCTCCACGTCTCCTCGCGCTCCGGCGCCACCCTCCTGGCCAAGAGCGTCCACGCCACCCTCCTCAAACACCCCCAAGACACCCACCTCTCCACCGCCCTCATCACCTCCTACCTCAAACTCCGCCTCTTCCCCCACGCGCTGCGCGTCTTCCTCTCCCTCGCCTCCCCCAACGTCGTCTCCTACACAACCCTAATCTCCGCCCTCGCACACTCCCGCCACGCGCTCCACCTCTTCCTCCGCATGACGCGCTCCCACGTCATCCCCAACGAGTACACCTACGTCGCCGTTTTAACCGCCTGCACCCGAACTTTCCACTTCCAATTGGGCCGCCAGCTCCACGCCGCGGCCCTCAAAACGGCCCATTTTGAGTCCCCCTTCGTCGCAAACTCCCTCATCGCTCTCTACGCAAACCACGCCTCCTTCCGCGTCGCGCTTAAGTTATTCCACCAAACTCCAAACAAGGACACTGCGTCGTGGAACACTCTTATATCCTCTGCGCTGCACCACTCCTTATACGACACCGCGTTTGGCTTATTCCGTCAAATGCAAACCACGGATGCGTTTAGCGTTGATGATTTCACGCTGTCCATACTTTTCTCCGCGTCCGCTTCGTTGGTGGAGGGTCAACAAGTTCACGCGCACGCTGTTAAGTTAGGCTTCGAAACTTGTTTGAACGTTGGGAATGGACTTGTAGGGTTTTACACCAAGTATGGAAGTATTGCTGAGGTGGAGTCCTTGTTTCAGGGGATGAGAGTGAGGGATGTTATCACTTGGACTGAGATGGTCACTGCTTATATGGAGTTTGGGTTGGTGGATTTGGCATTGAAGGTGTTTGATGAAATGCCGGACAAGAATTCGGTGTCGTATAATGCAGTTTTGTCTGGCTTGTGTCGAAACGGAGAAGGGTTAGAGGCGATGGAGTTGTTTGTTAGAATGGTGGAGGAGGGTCTGGAGTTGACGGATTTTAGTTTGACTAGTGCTGTGGATGCTAGTGGATTGCTTGGTGATTACAAGGTTTGCAAGCAGGTTCATGGGTTTGCGGTGAAGTTTGGGTTTGGATCGAATGCTTGTGTTGAAGTTGCGTTGCTTGACATGTACACGAGGTGTGGGAGGATGGTGGATGCTGAGAAGATGTTTTTGAGATGGGAGTTGGAGGAGTTTAGCTCTGTGGCTTGGACAAGCATGATATGTGGCTATGCTCGGAACGGGCAACCGGAGGAGGCCATTTCTCTTTTCCACGTTGGTCGATCGGGTGGGAAGCTGATTATGGATGAAGTTACGGCGGCTACGATGCTTGGTCTTTGTGGAACTGTTGGCCATCTTGATATGGGTAAGCAAATCCATTGCCATGTTGTGAAGTGTGGCTTGGGATGTAATTTGGAAGTCGGAAATGCAGTTGTTAGCATGTATTTTAAGTGCGGGAGTGTGGATGATGCAATGAGGACTTTTAATGATATGCCTTGTACCAATGTGGTTACGTGGAATACTTTGATTTCTGGCAATCTTATGCACAGACAGGGAGATAGAGCATTGGAAATATGGATGGAAATGCAGGAGGAGGGCATAAAGCCCGATCAAGTTACGTTTGTTTTGGTAATTTCAGCTTACAGGCAAACTGACTCGAATTTGGTTGATGATTGTCGTAGTTTATTTAATTCAATGAGAAGTGTTTATCAAATCGAGCCCACATCCGAGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTCTGCAAGAAGCACTAGAAACTATCAATAAGATGCCTTTCAAGCCTTCTGCTCTCATTTGGCGCTCATTGCTTGAGGGTTGCAGACTGCATAAGAATGCAATGATTGAAAAATGGGCGGCTCAGAATATTCTTTCTCTAGAACCTAAGGATCCTTCCACGTTTATACTCGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGATCGCTCTGAAATGGTGAGGGAGAGTATGAGAGAAAAGGGGTTTCGCAAACACCCAGTTCAAAGTTGGATCATTTCTCAGAAGAAAATACATACATTTTATCCTAGGGATAGATCACACACACAGGAGAAAGATATATATAGAGGATTGGAGATTCTGATCATGGAGTGCCTAAAGGTTGGATATGAACCTGACACGAGCTTTGTTCTCCATGAAGTAGAGGAGCATCACAAGAAAACTTTTCTATTCCATCACAGTGCTAAACTTGCAGCAACTTATGGGATACTGATGACCAAGCCCGGAAAGCCTGTTCGTGCTCGTGTAAGGACTGCTGGTGAGACGCTGTTTCGTCCAACTGGTCATCATCATTCATTTCAGTGA 2469 0.4937 MGVAVETWQCGLHCRSLNPFLSPPHPKPPFRHKPTTLRLRHATHHSLLHALHVSSRSGATLLAKSVHATLLKHPQDTHLSTALITSYLKLRLFPHALRVFLSLASPNVVSYTTLISALAHSRHALHLFLRMTRSHVIPNEYTYVAVLTACTRTFHFQLGRQLHAAALKTAHFESPFVANSLIALYANHASFRVALKLFHQTPNKDTASWNTLISSALHHSLYDTAFGLFRQMQTTDAFSVDDFTLSILFSASASLVEGQQVHAHAVKLGFETCLNVGNGLVGFYTKYGSIAEVESLFQGMRVRDVITWTEMVTAYMEFGLVDLALKVFDEMPDKNSVSYNAVLSGLCRNGEGLEAMELFVRMVEEGLELTDFSLTSAVDASGLLGDYKVCKQVHGFAVKFGFGSNACVEVALLDMYTRCGRMVDAEKMFLRWELEEFSSVAWTSMICGYARNGQPEEAISLFHVGRSGGKLIMDEVTAATMLGLCGTVGHLDMGKQIHCHVVKCGLGCNLEVGNAVVSMYFKCGSVDDAMRTFNDMPCTNVVTWNTLISGNLMHRQGDRALEIWMEMQEEGIKPDQVTFVLVISAYRQTDSNLVDDCRSLFNSMRSVYQIEPTSEHYASFISVLGHWGLLQEALETINKMPFKPSALIWRSLLEGCRLHKNAMIEKWAAQNILSLEPKDPSTFILVSNLYSASGRWDRSEMVRESMREKGFRKHPVQSWIISQKKIHTFYPRDRSHTQEKDIYRGLEILIMECLKVGYEPDTSFVLHEVEEHHKKTFLFHHSAKLAATYGILMTKPGKPVRARVRTAGETLFRPTGHHHSFQ 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02455 822 TIGRFAM PPR: pentatricopeptide repeat domain 440 463 IPR002885 -
Cca03g02455 822 TIGRFAM PPR: pentatricopeptide repeat domain 542 575 IPR002885 -
Cca03g02455 822 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Cca03g02455 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 334 IPR002885 -
Cca03g02455 822 Gene3D Tetratricopeptide repeat domain 157 265 IPR011990 GO:0005515
Cca03g02455 822 Gene3D Tetratricopeptide repeat domain 32 156 IPR011990 GO:0005515
Cca03g02455 822 Gene3D Tetratricopeptide repeat domain 266 385 IPR011990 GO:0005515
Cca03g02455 822 Pfam PPR repeat 411 431 IPR002885 -
Cca03g02455 822 Pfam PPR repeat 617 640 IPR002885 -
Cca03g02455 822 Pfam PPR repeat 514 537 IPR002885 -
Cca03g02455 822 Pfam PPR repeat 440 463 IPR002885 -
Cca03g02455 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cca03g02455 822 Pfam PPR repeat family 334 378 IPR002885 -
Cca03g02455 822 Pfam PPR repeat family 540 586 IPR002885 -
Cca03g02455 822 Pfam PPR repeat family 106 150 IPR002885 -
Cca03g02455 822 Pfam PPR repeat family 204 251 IPR002885 -
Cca03g02455 822 PANTHER - 322 796 - -
Cca03g02455 822 PANTHER - 40 330 - -
Cca03g02455 822 Pfam E motif 659 720 IPR046848 -
Cca03g02455 822 PANTHER - 322 796 - -
Cca03g02455 822 PANTHER - 40 330 - -
Cca03g02455 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Cca03g02455 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Cca03g02455 822 Pfam DYW family of nucleic acid deaminases 757 801 IPR032867 GO:0008270
Cca03g02455 822 Gene3D Tetratricopeptide repeat domain 386 489 IPR011990 GO:0005515
Cca03g02455 822 Gene3D Tetratricopeptide repeat domain 591 741 IPR011990 GO:0005515
Cca03g02455 822 Gene3D Tetratricopeptide repeat domain 490 590 IPR011990 GO:0005515
Cca03g02455 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02455 Cca-Chr3 45634512 45637104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02455 62 809 Glycoside Hydrolase AT3G49170 34.460 1.27e-128 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02455 - - gmx:100784704 1296.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02455 03 45634512 45637104 Cca03g02455 03 45634512 45637104 ECH