Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02454 ATGAAGTTGTGCTTTACAATCCTACTGGAAAGCCTGAAATCTTCTGATACAAAGCAGAACTTTTGCTTTCTGGCAACGGGTACAACTGAAGAAAGAAGAACATGGAAATACCAGGCACAACAGCTGACTTCTCTTAGTTTTTTCATTCTTTCAGAGTTTAGTGAATGCAATTCAGGGGCTCAAGATATTACTATTGTTACATCCCTAGCTATGCGAGTTCTTGTAATGTTAACTGATCTGAAAGGATGGAAAGGCATTACAGATGACAACCACATAGATGCAGATTTAGCAGTCAAAGATTTAATTCAGTTCATGGGGGATAATAAAAGTGGTTGTTATGTGTCTATTTCCAGATATATTAGTGCATTGGATAATTATTCTTCTCAGTCAAGGAGTATCACCCAGGCAGATGAATTTTTTTTCATTACTGCAAGTGCAATAACTTTAGCTATGCGGCCATTTTATCTGACAAACTATGATGTAGAAGTGCCTGGTATGCTGGATGTCAACCATGCTGTTAAGCAGTATCTTGTTTATCTGCTGACTATACCTTGTCTAGTGCAACGTCTCCCACCTGTTCTTCTACCTGCTTTAAAGCACAAATCTATTTTGTTTCCATGCTTCCAGACTTTATTGATTTTGAAAGAGAAAGTTTTGATGGAGATGTCAGAGTTCATCAAATCAGAGAATATTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGGCCCTCACTAACATTATATGCCTAGCAACGGGGAATGAGAATGAATCTTTCAATCAAGGTTTAGACTATGCATTGTATGTCAGTGTTGTTATTACTCTAGCAGAGGCCCTACTGGCTTGTCTCAATAATATTGGATGGATCAGAAAGAAAAGCAAAGCCCTAAAAACTGATGTTGATAGTTCAACACGGCCAGTTGATACAGTAATGCATGAGGGTGAAGCAACCAATGAATCCTTAATAATGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCAAAAATCTTTTGGAATCAATAGATAGAAATGCCACTAATGAGGCTGAGACTGTGCTCTCAAATAGCCTAGAATGTTTAGGGAAGCTAGAATTGTGTGATGTTGCACTTTTTTATTCTAACTTACTTGGAATATTTTCAGCCTTGAGTCCAATTCGTGGGTCATTATCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGAGATTGTGGGATGTACTAGAGGATTCTTTTTTTTCTGGAGACAAATATAATTCTGATAATAACACAAGTGAAAACAGCAAACATAAAGCCTTTGGGAAGATGCAAAAACACATCAGTAAAGACGGGGCTAATAAGTGGGTGAATGTACTTCATAAATTTACAGGTAAGTCACAAGCAGCAACAGATTGCACCGATTCTGTTGGAAGTCACTCTGAGCCTAGTAGGTTGAATGAGGATTCATCAGATGTATGGGACATAGAACCTATGAGGCATGGCCCACAAGGCATTCCAAAGAATATGTTTGCTATGCTTCATCTTTTCTGTGCGACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTAAATACCCTGGTTTACAATGGCTTGTCCCATGTTAGTGGTCATCATAATAGGCCTCTCATGGATTGTGCTGTCAGATGCTTACATTTACTATATGAAAGGGATTGCAGACACGTATTTTGTCCTCCTGCTTTGTGGCTTTCTCCTGCTAAAAAGAGCCGACCACCAATTGCAGTTGCTGCCAGAACTCATGAAGTTTTAGCAGCCAACCTGAGATCTGATGATTCATCAGCTTCACTGAGTGTAGGTTCTGTTGTCACCATCGTCCCTCATGTTTTCCCTTTTGAGGAGAGAGTTGAGATGTTTCGGGAATTCATCAAGATGGATAAAGCATCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAGTACGCCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGATCAAGGTTGAAGTCATCCATCCATGTATCATTTGTCAGTGAATGCGGCCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACTTATCTAAAGCAGCATTTTCTCCTGAATATGGGCTCTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCATCTGCCAGATATTTGGAGAATGGTATTCAAATGATCGAGTTTCTTGGAAGAGTAGTGGGTAAAGCTCTTTATGAAGGAATATTACTCGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTACTGGGACGATATAGCTTTCTTGGTGAATTATCGACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAACTATGACGGTGATGTCAAGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTGGGGAAAAGGTATGTGGTTGAACTTAAGTCTGGTGGCAAAGATATTTCTGTGACAAATGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTTAATCAACAGATATTGCCCTTTTCAAATGCCTTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGACATTGATGATTTGAAAAATAACACTCGATACACTGGTGGTTATAATGAGGGAAGCCGGACAATCAAGATATTTTGGGAGGTAATTAAAGGCTTTGAACCTAAAGAACGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTGCCATCCACAAGGTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGCTACCAACATACAAACTTCAAATGCTGGATTTGAACTTTCTTGACCTGCTTCAGTTTAATTCACATTCAAGGAATTTGAGAGTTGTCTACTTGTTCGTGCGACTTTTTATGTGTCTGTTTTCAGGACATACCATTGTTAGTGGGTCAGATGTGCTATTCAAGTTTTTGTTAAAGAAAATAGCATCCTGA 3237 0.393 MKLCFTILLESLKSSDTKQNFCFLATGTTEERRTWKYQAQQLTSLSFFILSEFSECNSGAQDITIVTSLAMRVLVMLTDLKGWKGITDDNHIDADLAVKDLIQFMGDNKSGCYVSISRYISALDNYSSQSRSITQADEFFFITASAITLAMRPFYLTNYDVEVPGMLDVNHAVKQYLVYLLTIPCLVQRLPPVLLPALKHKSILFPCFQTLLILKEKVLMEMSEFIKSENIVSFKAIPPVGWALTNIICLATGNENESFNQGLDYALYVSVVITLAEALLACLNNIGWIRKKSKALKTDVDSSTRPVDTVMHEGEATNESLIMSYMDQFRPVCQQWHLKNLLESIDRNATNEAETVLSNSLECLGKLELCDVALFYSNLLGIFSALSPIRGSLSVLNMLSFTPGFLVRLWDVLEDSFFSGDKYNSDNNTSENSKHKAFGKMQKHISKDGANKWVNVLHKFTGKSQAATDCTDSVGSHSEPSRLNEDSSDVWDIEPMRHGPQGIPKNMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKIEQQRRIASMLNTLVYNGLSHVSGHHNRPLMDCAVRCLHLLYERDCRHVFCPPALWLSPAKKSRPPIAVAARTHEVLAANLRSDDSSASLSVGSVVTIVPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFSPEYGLFSQTSTSDRLLIPTASARYLENGIQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLGELSTLDPELYRNLMYVKNYDGDVKELCLDFTVTEESLGKRYVVELKSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPKERCMLLKFVTSCSRAPLLGFKYLQPPFAIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKLQMLDLNFLDLLQFNSHSRNLRVVYLFVRLFMCLFSGHTIVSGSDVLFKFLLKKIAS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02454 1078 ProSiteProfiles PH domain profile. 1 44 IPR001849 -
Cca03g02454 1078 Gene3D Hect, E3 ligase catalytic domain 801 880 - -
Cca03g02454 1078 CDD HECTc 675 1021 IPR000569 GO:0004842
Cca03g02454 1078 Gene3D Hect, E3 ligase catalytic domain 918 1030 - -
Cca03g02454 1078 ProSiteProfiles HECT domain profile. 699 1020 IPR000569 GO:0004842
Cca03g02454 1078 SUPERFAMILY Hect, E3 ligase catalytic domain 675 1021 IPR035983 GO:0004842
Cca03g02454 1078 MobiDBLite consensus disorder prediction 468 487 - -
Cca03g02454 1078 SMART hect_3 693 1028 IPR000569 GO:0004842
Cca03g02454 1078 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1021 IPR044611 GO:0000209|GO:0061630
Cca03g02454 1078 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1021 - -
Cca03g02454 1078 Pfam HECT-domain (ubiquitin-transferase) 730 1021 IPR000569 GO:0004842
Cca03g02454 1078 Gene3D Hect, E3 ligase catalytic domains 677 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02454 Cca-Chr3 45617427 45628466 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02454 K10588 - gmx:100527169 1886.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02454 03 45617427 45628466 Cca03g02454 03 45617427 45628466 ECH