Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02451 ATGGGAAGAGACCGAAGACGAAGAAAATCACATgactccgactccgattccgattccgattccgaCAGGCGCCACGGAAGCAGTACCCGCCGCTCTCGGCGGGGGTCCCGCCGCGGGAGGAGAATGGGAAGAGACCGAAGACGAAGAAAATCACATgactccgactccgattccgattccgattccgaCAGGCGCCACGGAAGCAGTCCCCGCCGCTCTCGGCGGGACTCCGACGGCGATAAAAAGAAGAAGTCCTCGAGGACTATCACAGATGAGGAAATTACGCAGTACATGGCCAAAAAGGCCCAATCGAAGGCAATGAAAGTCGCTAAAAAGTTGAAAACTAGTACGGTATCTGGTTATTCAAACGATTCCAATCCCTTTGGTGACTCTAATCTCAACGAGAAGTTTGTTTGGCGCAAGAAGATTGAGCGTGATGTTTCTCAAGGCGTGTCTATTGATACGTTTTCAGTTAAAGCAGAGAAGAATAGACAGAGGGAGAGGATGGCAGAAATAGAAAAAGTGAAGAAACGAAGAGAGGAAAGGGCACTTGAGAAAGCACGACATGAGGAAGAAATGGCATTGCTTGCCAGAGAACGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATCAGATTGCGTGAAGGGCGTGCCAGACCAATTGATGTCTTAACCAAGCATCTCAATGGTTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTTAATGAAATGAATGAGCTACGTGATGACATCAAAATGCATCTGGACCTTGACAGGGCAACGCCAACACATGTAGTATATTGGGAGGCACTCCTTCTGGTGTGTGACTGGGAGCTAGCTGAAGCCCGAAAAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAACCAGATGTGAAGAAGCTTCTGCTGGGGAAGACACATGCAGAGTTGGAGGCTTTACAGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAATACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATGTCTTGAGCAACCATTGGAGGATGAAGATAAATTAGAGAATGCTCATGATATGATACCTGAGGAGGAGGAAGGTACTGAAGATGATATTAAAGTCCGATCTGCCGATGAATCATTCTCACCAGACCCTGTTAGAGAGGATCAAGAAGCTGAAGATGAGGCTGGATCATTTTCACCCCAACTGTTGCATGGTGATGAAAATGAGGAAGCTGTTGACCCTGAAGAGGACAAAGCTATGCTGGAGCGGAATCGCAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAGCTCCTTCTGAAGATAATTTTGAGATGAAAGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGATGCTGTGTTTGGATCTGGTGCTGAAGTGAATTTGGATTCTCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCAAAGTATTTCAACCGGGTTCATACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTGCAAGGGTACAAATTTAATATTTTCTATCCTGATCTTGTAGACAAAACAAAAGCCCCAAGTTACACCATTGAGAAGGATGGCAGCAACGGGGAGACTTGCATTATAAGATTCCATGCAGGGCCACCATACGAAGACATAGCTTTCCGCATTGTAAACAAAGAATGGGAATATTCTCATAAAAAAGGCTTTAAGTGCACATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCATCGCTACCGCAGATAA 2016 0.433 MGRDRRRRKSHDSDSDSDSDSDRRHGSSTRRSRRGSRRGRRMGRDRRRRKSHDSDSDSDSDSDRRHGSSPRRSRRDSDGDKKKKSSRTITDEEITQYMAKKAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIDTFSVKAEKNRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMNELRDDIKMHLDLDRATPTHVVYWEALLLVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKKLLLGKTHAELEALQVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQCLEQPLEDEDKLENAHDMIPEEEEGTEDDIKVRSADESFSPDPVREDQEAEDEAGSFSPQLLHGDENEEAVDPEEDKAMLERNRKAVLEEQQRRVQEAMASKPAPSEDNFEMKALKAMGDMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPSYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02451 671 MobiDBLite consensus disorder prediction 1 94 - -
Cca03g02451 671 MobiDBLite consensus disorder prediction 48 90 - -
Cca03g02451 671 MobiDBLite consensus disorder prediction 422 480 - -
Cca03g02451 671 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 3 671 - -
Cca03g02451 671 PANTHER BNAC05G02180D PROTEIN 3 671 - -
Cca03g02451 671 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g02451 671 Coils Coil 162 206 - -
Cca03g02451 671 Pfam Cactus-binding C-terminus of cactin protein 547 671 IPR019134 GO:0005515
Cca03g02451 671 MobiDBLite consensus disorder prediction 28 47 - -
Cca03g02451 671 Pfam Conserved mid region of cactin 198 395 IPR018816 -
Cca03g02451 671 SMART CactinC_cactus_3 547 671 - -
Cca03g02451 671 MobiDBLite consensus disorder prediction 430 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02451 Cca-Chr3 45575860 45581833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02451 K25058 - gmx:100780087 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02451 03 45575860 45581833 Cca03g02451 03 45575860 45581833 ECH