Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02446 ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAATCACAATCGTGGTATCCGCCATCGGTGGCGAGCACACCAACATCGTCGAGGCCTCTTACACCGTCTGCGTCATCATCTTCCTTGCAGAGGACTTCGTCGAATGTTCCACCTTCCGAAGCTGCTGGAGTTATTGCCATTTTGAAGGACAAGAGTGCTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAAGAACCTCGCATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACTGAGTTGGCTGCTGCTAAAGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGAAATGTTGAAGTTGAATTCCCCAGCATCTCTTATCCAAAGGATTCAAGAGTCTGCGAATAAGACTGACGAGGAATCTGAAAATCTGCACCAGCATCTCCTGGACAGAGAGATTGACCTTGGGGCTTTCTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAAACTCTCATACATTTAGCCGCTAAAACATCAACAATATGA 663 0.4329 MFRFWGSQEQQSQDGSSQSQSWYPPSVASTPTSSRPLTPSASSSSLQRTSSNVPPSEAAGVIAILKDKSADELRKLLSDKDAYQQFLHSLDQVKIQNNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEEMLKLNSPASLIQRIQESANKTDEESENLHQHLLDREIDLGAFLQKYKKLRTTYHRKTLIHLAAKTSTI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02446 220 ProSiteProfiles VPS37 C-terminal domain profile. 140 220 IPR009851 -
Cca03g02446 220 Coils Coil 129 156 - -
Cca03g02446 220 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 1 220 - -
Cca03g02446 220 MobiDBLite consensus disorder prediction 1 54 - -
Cca03g02446 220 Gene3D Helix hairpin bin 142 213 IPR029012 -
Cca03g02446 220 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 1 220 - -
Cca03g02446 220 Pfam Modifier of rudimentary (Mod(r)) protein 66 209 IPR009851 -
Cca03g02446 220 SUPERFAMILY Endosomal sorting complex assembly domain 158 208 IPR037202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02446 Cca-Chr3 45536922 45540760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02446 K12185 - gmx:100305851 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02446 03 45536922 45540760 Cca03g02446 03 45536922 45540760 ECH