Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02438 ATGGCATCCCAACCACCTCAGCTTCACTTCGTTCTGTTTCCCCTCATGTCCCCAGGCCACATGCTCCCCATGATAGACCTGGCAACAACATTGGCACAGCATAACACGATTGTTACCGTAGTCACCACCCCACATAACGCTTCCCGTTTCTCACATACCTTTGCTCGTGCTTCCGACTCAGGCCTTCACCTCCGATTGCTTCAACTCCACTTTCCATCCCAAGATGCTGGCTTTCCCCAAGGTTGTGAGAATTTCGACATGCTTCCTTCAATGAGCATGGCCTGGAGTTTCTTCACTGCCGCAAACACCATTCTACACGAACCGGCTGAGAAAGTGTTTGGAGAGTTAACACCAAAACCAAACTGCATAATCTCTGATGTGAGTTTCCATTACACATCCCACATCGCCACCAAATTCAACATCCCCAGAATCTCTTTCTACGGAGTTAGTTGCTTCTGCCTCTCGTGGCAGCAAAAACTGTTCACTTCTAAGTTTATTGAGAGCATAGCCACGGATTCGGAGTACTTTTTGATACCCGACATCCCTGACAAAGTTGAGATCACCAAAGCACAGACGCCAAAAGGATCAACGGATGAAAACTGGACCGAGTTTGTTGGCAAAATGGCCGCAGCTGAAACGGCTTCTTATGGCGTGGTCGTGAATTCTTTTGAGGAGTTGGAGCCAGCATATGCAAGTGATTTCAAGAAAGTTAAGAATGATAAAGTGTGGTGTGTTGGCCCTCTTTCACTCAGAAACAGGAGCCACTTGGATAAGGCTCAAAGAGGGAACAACACCCCAAGTGATGATGCGCATAACTGCATGAAGTGGCTTGCGATGCAGAAACCAAATTCAGTGATTTACGTGTGCCTTGGAAGCATGTGCAATTTAACACCATTGCAGTTGATAGAGCTTGGTATGGCCTTAGAAGAATCTAAAATACCGTTCATTTGGGTTATCAGGGAGAGAAATCAAACAGAAGAATTGAACAAGTGGATAAAGGAATCGAGGTTTGAGGAGAGGAGCAAGGGTTTGGGCCTTTTGGTTCGGGGTTGGGCTCCTCAGGTGCTAATACTATCACACCCTGCAATTGGAGGGTTCTTAACACACTGTGGTTGGAACTCAAGCTTAGAGGCAATAAGTGCTGGCGTGCCAATGCTTACGTGGCCATTGTTTGGGGATCAATTCTACAATGAGAGGTTCATTGTGCAGATAATAAGAGTTGGGGTGCGAGTTGGAGTGGAAAGTCCTGTGAACTGGGGCGATGAAGAGAAAAGTGGGGTCTTGGTGAAGAAGGAAGATCTTGTGAGAGCTATAGAGAAGTTAATGGATGAGGGAAATGAAAGAGAAGAGAGAAGAAAAAGGGTCAGAGAGCTAGCGGAGATGGCTAAGAGAGCTGTAGAGGGAGGATCTTCTCACGTCAATGTGACTCAGCTACTCCAAGATATCAAGCAACAGTACTCCAACAAAGACTGA 1473 0.4657 MASQPPQLHFVLFPLMSPGHMLPMIDLATTLAQHNTIVTVVTTPHNASRFSHTFARASDSGLHLRLLQLHFPSQDAGFPQGCENFDMLPSMSMAWSFFTAANTILHEPAEKVFGELTPKPNCIISDVSFHYTSHIATKFNIPRISFYGVSCFCLSWQQKLFTSKFIESIATDSEYFLIPDIPDKVEITKAQTPKGSTDENWTEFVGKMAAAETASYGVVVNSFEELEPAYASDFKKVKNDKVWCVGPLSLRNRSHLDKAQRGNNTPSDDAHNCMKWLAMQKPNSVIYVCLGSMCNLTPLQLIELGMALEESKIPFIWVIRERNQTEELNKWIKESRFEERSKGLGLLVRGWAPQVLILSHPAIGGFLTHCGWNSSLEAISAGVPMLTWPLFGDQFYNERFIVQIIRVGVRVGVESPVNWGDEEKSGVLVKKEDLVRAIEKLMDEGNEREERRKRVRELAEMAKRAVEGGSSHVNVTQLLQDIKQQYSNKD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02438 490 Coils Coil 431 451 - -
Cca03g02438 490 Gene3D Glycogen Phosphorylase B; 274 467 - -
Cca03g02438 490 ProSitePatterns UDP-glycosyltransferases signature. 351 394 IPR035595 -
Cca03g02438 490 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 483 - -
Cca03g02438 490 PANTHER GLYCOSYLTRANSFERASE 3 489 - -
Cca03g02438 490 PANTHER GLYCOSYLTRANSFERASE 3 489 - -
Cca03g02438 490 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 268 401 IPR002213 GO:0008194
Cca03g02438 490 Gene3D Glycogen Phosphorylase B; 6 273 - -
Cca03g02438 490 CDD GT1_Gtf-like 8 443 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02438 Cca-Chr3 45439257 45441085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02438 1 484 Glycosyltransferase AT2G36750 54.004 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02438 K13496 K22771 gmx:112997714 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02438 03 45439257 45441085 Cca03g02438 03 45439257 45441085 ECH