Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02420 ATGGCCAAGAAGAGGACCAACAGGAAGACCCAAATGACAATTCCCATTCCAAAACACTCTCAACAGCCAAGAAGCTCACCTCCCAAACGCCGCACTGATTTCTCTGTGTTCACTCGCACTCCCTCTTCCTTCTCCAACCCTTTTTCAGGTTCCTCACCAGGTTCATCTACTTGTGAAGTAAGGTTGTCCAATGTCACCGCAAGCAGTTTGCAGGAGAGGAGAATGACAATGAAACAATTTTCTGTAGATACGCTGGTTCGATGCAACATTTACAAAGAGGGTAGATCAGTATGTTCATCTGAGTTTTATGATGCCCCTATTGGGGGACTTGATTCAGCTGTCCAAGATGAAAGTCTTAACCTTGGTGGCAATAGGGATGCTTGCAATGAAAAAATTGATATTTCCAAGATGTCAGAATTTACCCCACTTGAATCATCTGCCAGTGATAACAGTTCTCTTGCTGTAACTCTTGGAAGTGTTGTATGGGCAAGGACAGCTTGTCAAGTGTGGTGGCCTGCTGAGATCATGGAAGAAACATCTGAGATATCCAACCCTGGCAGTGGTGGACATGTTTTAGTGCATTTTTATGGAAATCTTCCCAGTGCCTGGATTGATCCAATGACAGATATTTCAACTTTTGAGGATTCTTTTAAAGAAAGGAGCAATAACCCTTCAGAAGATTTTCAACAAGCTTTAAAGCAAGCCTTACAAAGGAAGACACAACTTAGTTCTTGCCAAAAGTTGACTCCTGATTGGTCTACTCACTCTGATCAGCAAGAACGTTCATCTGATAAATACACTTCAACTAGCACAAGCAGGACAACTGATGATTTTCAAGTGAGACGAAGAGGGAAAAGGGAACGTAAACCCAAAGTTCACTTTGATGAGGTTACATATCCAATGAAATCAGAAAGAAAGGTTCGTCGTTTAAAGATAATGCGGTACCTCGGCCTTGCAGCTCCACTTGGTTCACCCTTTTGA 981 0.4261 MAKKRTNRKTQMTIPIPKHSQQPRSSPPKRRTDFSVFTRTPSSFSNPFSGSSPGSSTCEVRLSNVTASSLQERRMTMKQFSVDTLVRCNIYKEGRSVCSSEFYDAPIGGLDSAVQDESLNLGGNRDACNEKIDISKMSEFTPLESSASDNSSLAVTLGSVVWARTACQVWWPAEIMEETSEISNPGSGGHVLVHFYGNLPSAWIDPMTDISTFEDSFKERSNNPSEDFQQALKQALQRKTQLSSCQKLTPDWSTHSDQQERSSDKYTSTSTSRTTDDFQVRRRGKRERKPKVHFDEVTYPMKSERKVRRLKIMRYLGLAAPLGSPF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02420 326 PANTHER ALDOLASE-RELATED 302 326 - -
Cca03g02420 326 PANTHER ALDOLASE-RELATED 133 271 - -
Cca03g02420 326 MobiDBLite consensus disorder prediction 1 57 - -
Cca03g02420 326 MobiDBLite consensus disorder prediction 27 57 - -
Cca03g02420 326 PANTHER OS08G0477800 PROTEIN 133 271 - -
Cca03g02420 326 PANTHER OS08G0477800 PROTEIN 302 326 - -
Cca03g02420 326 ProSiteProfiles PWWP domain profile. 157 215 IPR000313 -
Cca03g02420 326 Gene3D - 145 249 - -
Cca03g02420 326 MobiDBLite consensus disorder prediction 247 292 - -
Cca03g02420 326 Pfam PWWP domain 158 237 IPR000313 -
Cca03g02420 326 MobiDBLite consensus disorder prediction 276 292 - -
Cca03g02420 326 SUPERFAMILY Tudor/PWWP/MBT 155 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02420 Cca-Chr3 45282835 45288407 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02420 - - gmx:100801494 499.204