Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02419 ATGAAACGTGAAGCTGCCATGGCATTCCCTATGGGAGCCCTGGTGACCACATCATGGCTCTTTCTTGTTGCATTAGTTCCACTTCCTAATGTCCATGCAAACTCATGGTCACATGCAGCTCATAACATGGTTGGAAGACGTAACAAGATGGTTAGCATAAGCCCGAATTCCCCTGACCGCGTTTCTTGGCCTGGCCCATGGGCGAAAGCCCATGCTACGTTCTATGAAGGAGGCCCTCGATCATTTGGAGGAGCTTGTGGGTACAAGGATGTGGTGAAAGAAGGTTATGGGCTTGACACGACAGCATTGAGTTCAGTTTTGTTCAAAAACGGGCAGACATGTGGAGCATGTTACGAGTTGAAATGTGTAGACTCTCCTCAGTGGTGTAAGGCAGGGCAACCCTCTATTTTTGTGACGGCAACAAACCATTGCCCCCCTAATTTTGATAAACCAGGTGATGATGGAGGATGGTGCAACCCTCCACGCCAGCACTTTGATTTAGCCAAACCTGCATATCTCAAAATTGCACTCTACAAATCTGGCATCGTCCCAGTCCAATATCGCAGGGTACCATGCAAGAAGCAAGGAGGAATTCGGTTCACGATAAATGGGAATCCGTACTTCAATCTAGTACTGGTGTGGAATGTTGGAGGAGCTGGGGACGTGACAGCAGTGCGGGTGAAGGGAAACAAAAAGGTCATAAATTGGACAAATATGAAGAGAAATTGGGGTCAGAAATGGGAGAGTACGGACATGTTAGTGGGAGAGAAATTGACGTTCAGTGTCAGAGCCAGTGATGGTAGGTTCTCTGTTTCACGCAACGTTGTTCCCAGCAATTGGAAGTTTGGTCAAACCTTTCAAGGCAAAAACTTCACATAA 879 0.4721 MKREAAMAFPMGALVTTSWLFLVALVPLPNVHANSWSHAAHNMVGRRNKMVSISPNSPDRVSWPGPWAKAHATFYEGGPRSFGGACGYKDVVKEGYGLDTTALSSVLFKNGQTCGACYELKCVDSPQWCKAGQPSIFVTATNHCPPNFDKPGDDGGWCNPPRQHFDLAKPAYLKIALYKSGIVPVQYRRVPCKKQGGIRFTINGNPYFNLVLVWNVGGAGDVTAVRVKGNKKVINWTNMKRNWGQKWESTDMLVGEKLTFSVRASDGRFSVSRNVVPSNWKFGQTFQGKNFT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02419 292 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 207 288 IPR007117 -
Cca03g02419 292 Pfam Expansin C-terminal domain 198 277 IPR007117 -
Cca03g02419 292 PRINTS Expansin/Lol pI family signature 66 81 IPR007118 GO:0005576
Cca03g02419 292 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Cca03g02419 292 PRINTS Expansin/Lol pI family signature 180 196 IPR007118 GO:0005576
Cca03g02419 292 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Cca03g02419 292 PRINTS Expansin/Lol pI family signature 274 288 IPR007118 GO:0005576
Cca03g02419 292 Gene3D - 196 291 IPR036749 -
Cca03g02419 292 SUPERFAMILY Barwin-like endoglucanases 61 215 IPR036908 -
Cca03g02419 292 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 83 197 IPR007112 -
Cca03g02419 292 PRINTS Expansin signature 95 109 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 122 133 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 136 146 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 155 172 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 172 185 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 196 208 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 245 266 IPR002963 GO:0009664
Cca03g02419 292 PRINTS Expansin signature 274 290 IPR002963 GO:0009664
Cca03g02419 292 SUPERFAMILY PHL pollen allergen 194 288 IPR036749 -
Cca03g02419 292 SMART dpbb_1 100 187 IPR007112 -
Cca03g02419 292 PANTHER EXPANSIN-A15 43 291 IPR002963 GO:0009664
Cca03g02419 292 Gene3D - 51 193 IPR036908 -
Cca03g02419 292 PANTHER EXPANSIN-A32 43 291 - -
Cca03g02419 292 Pfam Lytic transglycolase 101 187 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02419 Cca-Chr3 45276164 45277399 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02419 65 291 Miscellaneous Gene Families AT5G02260 61.572 2.36e-107 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02419 - - ccaj:109796033 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02419 03 45276164 45277399 Cca03g02419 03 45276164 45277399 ECH