Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02418 ATGGTGAAGGCCTACCTCCGATACGAGCCAGCGGCGTCGTTTGGCGTGATAGCGTCGGTGGATTCGAACATCGCATACGACAGCTCCGGCAAGCACCTCCTCTCTCCGGCGCTCGAGAAAATCGGCGTCTGGCACGTGCGGCAGGGCCTCTGCACCAAAACCCTAGCCCCTACCTCTTCATCGCGCGGTCCTTCCCTCGCCGTCACTTCCATCGCCTCCTCTTCTTCCTCCCTGATTGCAGCTGGTTACGGTGACGGTAGCATACGGATTTGGGATTCTGATAAGGGAACATGCGAGACTACGTTGAATGGACACAAGGGAGCTGTGACCGCGCTTCGTTACAACAAGGCTGGTTCGTTGCTTGCCTCTGGTAGCAAGGATAATGATGTTATTTTATGGGATGTGGTTGGCGAGAATGGGCTCTTTCGCCTTCGTGGTCATCGTGACCAGGTGACTGACGTTGTTTTCATAAGTTCTGGGAAAAAGCTTGTTACTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTTGGTGGTCATCATAGTGAAATATGGTCCCTAGATATTGATCTGGATGAAAGATATCTGGTCACTGGTTCTGCAGATAAGGAACTTCGTTTTTATGCAATCAGGCACGAGTCTGTGGATGGGGAGTCTGTAAATGGCGCTGAAGAAGAATCTTCTGTTCAAAACAAATGGGACGTTTTGAGGCATTTTGGTGAAATTCAGCGACAAAGTAAGGAAAGAGTTGCAACAGTGCAGTTCAACAAGTCAGGGAATCTGTTAGCATGCCAAGTTGCTGGAAAAACGGTGGAAATATATCGTGTATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGAAGGGTGCACCGTAAGAAAGAGAAGAAACATAGTAAAGATGCTTTGGAGGGAATAGAAAATGGAGATGAGAATAAGGAGAAGAAAGGAGATAATTCTTCTGTCACTCATGGACCCATAGAAACAAGTTACCCTACAGTAACTGTGCCTGATGTTTTTAAACTGTTGCATACTATTAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCGAAGAATACACTGGCTAGTTTAGCATTGTCCCTGAACAATAATCTACTTGAGTTTTACTCCATTGAACATGGTGAAACCAAACAAACACTTGCCATTGATCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTCGCACTTAGTTCAGACAACAGTTTTCTGATGTCAACCAGTCACAATGCAGTAAAAATTTGGAACCCAAGTACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTTTGCAGTTTAATTCTTCCCAGTAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGCACTTGTCTTGAAGTAATTGAAGCTCATGGTGGTTCTGTTCGCTCAATTGCTGCCCTGCCACATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTAAAATTTTGGGAGTACCAAATTAAGCAAAAACCTGGTCAAGCTGCTAAGCAACTCATTGTGTCAAATGTTAGTGCCATGAAAATGAATGATGATGCACTTGTGGTTGCAATTAGCCCTGATGCTAAGTATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTCTTCCTTTCATTATATGGTCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATCGTGACTGGCTCTGCAGATAAAAATATAAAGATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATTTTTGCTCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAAACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTTGTAAAATATTGGGATGCTGATAAATTTGAGCTTCTGTTGACTCTTGAAGGACATCATGCTGATATTTGGTGTCTTGCGGTCAGTAGTCGTGGTGATTTTATTGTCACTGGATCTCATGATCGTTCTATCCGCCGCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCATTTGATAACAAGTATGCATCGAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAGTCCCAGGAAACCCTTACTGCTACTGACTTAATTATTGAGAGATTAGACATTGCAGAAGCTGAACAAAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAGAAATGTTGCTGTTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGACTACGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATTTGGAGCAAACTTTATTGGCTTTACCATTTTCAGATGCATTGAAGCTTCTATCATACTTGAAAGACTGGTCTTCATATTCTGATAAGGTTGAGCTTGTTTGTAGAATAGGTACACTGCTGTTGCAGACACATTACAACCAGCTTCTTTCCACACCAGCTGCACGACCTATCTTGACTGTTTTCAGTGACATTTTCTACGAAAGGGTCAAGGGGTGGAAAGATATCTTTGGTTTTAACCTTGCCGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAAATCAAAACTGATAGAGATACGGACTCGACAATCCAAACGTTTAGAAGAAAGGTCTGATACTGGGGAAGTGAAGCGGAAGAAGAAGAAGACATAA 2838 0.4292 MVKAYLRYEPAASFGVIASVDSNIAYDSSGKHLLSPALEKIGVWHVRQGLCTKTLAPTSSSRGPSLAVTSIASSSSSLIAAGYGDGSIRIWDSDKGTCETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGENGLFRLRGHRDQVTDVVFISSGKKLVTSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDIDLDERYLVTGSADKELRFYAIRHESVDGESVNGAEEESSVQNKWDVLRHFGEIQRQSKERVATVQFNKSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHSKDALEGIENGDENKEKKGDNSSVTHGPIETSYPTVTVPDVFKLLHTIRASKKICSISFCPITPKNTLASLALSLNNNLLEFYSIEHGETKQTLAIDLQGHRSDVRSVALSSDNSFLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPSNKYGLVGTKDGTIEIIDIGSGTCLEVIEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQIKQKPGQAAKQLIVSNVSAMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSSRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFDNKYASKEEIPEEGAVALAGKQSQETLTATDLIIERLDIAEAEQKRIAEHQEEKNNRNVAVFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWSSYSDKVELVCRIGTLLLQTHYNQLLSTPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFHDAKSKLIEIRTRQSKRLEERSDTGEVKRKKKKT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 697 IPR001680 GO:0005515
Cca03g02418 945 MobiDBLite consensus disorder prediction 306 330 - -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 615 - -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 697 - -
Cca03g02418 945 Pfam WD domain, G-beta repeat 64 92 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 579 612 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 141 176 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 660 697 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 480 517 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 405 436 IPR001680 GO:0005515
Cca03g02418 945 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 445 IPR001680 GO:0005515
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Cca03g02418 945 Gene3D - 450 649 IPR015943 GO:0005515
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 655 - -
Cca03g02418 945 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Cca03g02418 945 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Cca03g02418 945 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Cca03g02418 945 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 518 IPR001680 GO:0005515
Cca03g02418 945 CDD WD40 405 697 - -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Cca03g02418 945 SMART WD40_4 54 92 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 616 655 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 398 436 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 479 518 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 247 284 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 179 218 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 658 697 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 533 571 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 574 613 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 137 176 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 439 476 IPR001680 GO:0005515
Cca03g02418 945 SMART WD40_4 95 134 IPR001680 GO:0005515
Cca03g02418 945 CDD WD40 98 518 - -
Cca03g02418 945 Gene3D - 654 715 IPR015943 GO:0005515
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Cca03g02418 945 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 944 - -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 664 IPR001680 GO:0005515
Cca03g02418 945 SUPERFAMILY Nucleoporin domain 349 702 - -
Cca03g02418 945 Coils Coil 286 306 - -
Cca03g02418 945 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 518 - -
Cca03g02418 945 SUPERFAMILY WD40 repeat-like 73 398 IPR036322 GO:0005515
Cca03g02418 945 Pfam Dip2/Utp12 Family 800 900 IPR007148 -
Cca03g02418 945 Gene3D - 342 449 IPR015943 GO:0005515
Cca03g02418 945 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 944 - -
Cca03g02418 945 Gene3D - 16 321 IPR015943 GO:0005515
Cca03g02418 945 MobiDBLite consensus disorder prediction 294 338 - -
Cca03g02418 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02418 578 706 Miscellaneous Gene Families AT5G08390 27.907 4.67e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02418 K14556 - gmx:100775810 1736.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02418 03 45264532 45274796 Cca03g02418 03 45264532 45274796 ECH