Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02416 ATGAGTTCATCCTCAGGTCAGGGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCCGGTGTGGGAAAAAGTAGCTTACTTGTCAGCTTCATTTCAAGTTCTGTGGAAGATCTTTCCCCCACCATCGGTGTTGATTTTAAGATCAAAACGCTCACAGTAGGTGGCAAGAGGTTGAAATTAACGATCTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTGTAACCAGCTCTTACTATAGAAAGGCACAAGGAATCATTCTCGTTTACGATGTCACAAGGAGAGAAACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTATTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATACTGAAAGGGCTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAATTGGGGTGTTTTCTTCTAGAATGCAGTGCTAAAACTCGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCTAGTCTTCTGGAAGAAGGATCAACAGCAGTTAAAAGGAATGTCTTAAAGCAGAAACAAGAACCCCAAGCATCCCAAAATAGTGGTTGTTGCTCTTAA 636 0.4261 MSSSSGQGSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTVTSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRDTERAVSREEGLALAKELGCFLLECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNVLKQKQEPQASQNSGCCS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02416 211 ProSiteProfiles small GTPase Ras family profile. 2 211 IPR001806 GO:0003924|GO:0005525
Cca03g02416 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Cca03g02416 211 PANTHER DRAB5-RELATED 1 211 - -
Cca03g02416 211 Gene3D - 9 210 IPR027417 -
Cca03g02416 211 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Cca03g02416 211 ProSiteProfiles small GTPase Rab1 family profile. 10 210 - -
Cca03g02416 211 SMART arf_sub_2 5 180 - -
Cca03g02416 211 CDD Rab18 15 176 - -
Cca03g02416 211 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 211 - -
Cca03g02416 211 SMART rab_sub_5 15 179 - -
Cca03g02416 211 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Cca03g02416 211 SMART ras_sub_4 12 179 - -
Cca03g02416 211 SMART ran_sub_2 20 210 - -
Cca03g02416 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Cca03g02416 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Cca03g02416 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Cca03g02416 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Cca03g02416 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Cca03g02416 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Cca03g02416 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 200 IPR027417 -
Cca03g02416 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02416 Cca-Chr3 45238446 45241659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02416 9 179 EF-hand Containing Proteins AT5G27540 28.488 2.03e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02416 K07910 - gmx:100799887 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02416 03 45238446 45241659 Cca03g02416 03 45238446 45241659 ECH
Cca03g02416 03 45238446 45241659 Cca02g00462 02 9791041 9793967 PCT