Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02401 ATGGCGTCTCCGTTTGAGCCACACCACTACGACCTTTCCGACACTGAAGCCGCACACCTCCTTGCAGCCACAGCAGGTGAAATCTCAAGCGACGAAGGAATCGTCGAAGACGACGAAGAACCCTACATCACCGATGTGCCATCTCCCACGGCTTCTCACGACGCGCCTCATACTCCTGATCCATCCGACGAAGCAATCGTCATGCCCGATGAATCGCCCAATTGCGCCGCAGAGGGAAAGAAACGCCGCAGAACCGAAGAAGGCCAGTCTTCTGGTTCCGATGACAACGCGTGGAACCGCACTGAGATTGATGGTCTCGTTTGCCCTATCTGCATGGATGTTTGGACCAATAAGGGCGAACACCACATTTGCTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAGATGGCTTCAACGTAGGGCAGGTTCTGCCAATTGCCCTCAATGTAATAGGAAATGTTCGATGAAGGATGTGAGAAAATTATATGCCTCTCGAGTTGTGGCTGTTGATGAAGAATCTCATAAGAGAATTCGGTTACTTGAGGCCAAGTGTATTGCCCTTGAAAGTAAGGACACTGATTGGCAAAAGAAAGAAGCTGGATGGCAGAAGAGTGAAGCTGCCTTGCATCTTCAAGTTCAGAAGCTTACAGAGGCATCTCTTAAGGATATTGCTGACAGTAAGAAGCAAGGACAGGTTTACAACACTGCAGATTTATTTGCGAACGTGTGGCGTGGCATGTCTTCTCTGTCTGAGTCTCAAAATCAAATTCCTTCAGCGGGCTCTGTCACACTTGAGGAGAGGATCACTAGAACTGAGCAGAGGATTGCTATCTTGGAGCAACAGATACAGGCCGTGATACTATGGACTGGAGCAACATATGCAGGCCGTGATGCTGCGAATTGA 915 0.4896 MASPFEPHHYDLSDTEAAHLLAATAGEISSDEGIVEDDEEPYITDVPSPTASHDAPHTPDPSDEAIVMPDESPNCAAEGKKRRRTEEGQSSGSDDNAWNRTEIDGLVCPICMDVWTNKGEHHICCLPCGHIYGMSCIKRWLQRRAGSANCPQCNRKCSMKDVRKLYASRVVAVDEESHKRIRLLEAKCIALESKDTDWQKKEAGWQKSEAALHLQVQKLTEASLKDIADSKKQGQVYNTADLFANVWRGMSSLSESQNQIPSAGSVTLEERITRTEQRIAILEQQIQAVILWTGATYAGRDAAN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02401 304 ProSiteProfiles Zinc finger RING-type profile. 108 154 IPR001841 -
Cca03g02401 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 228 IPR013083 -
Cca03g02401 304 Pfam Ring finger domain 108 154 IPR001841 -
Cca03g02401 304 Coils Coil 265 285 - -
Cca03g02401 304 CDD mRING-C3HGC3_RFWD3 104 154 - -
Cca03g02401 304 SUPERFAMILY RING/U-box 98 160 - -
Cca03g02401 304 MobiDBLite consensus disorder prediction 75 90 - -
Cca03g02401 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 36 225 - -
Cca03g02401 304 SMART ring_2 108 153 IPR001841 -
Cca03g02401 304 MobiDBLite consensus disorder prediction 24 97 - -
Cca03g02401 304 PANTHER RFWD3 PROTEIN 36 225 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02401 Cca-Chr3 45108687 45111194 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02401 K15691 - ccaj:109797290 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02401 03 45108687 45111194 Cca03g02401 03 45108687 45111194 ECH