Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02376 ATGGACACACGAAGTGAGATAATGCATTCAAAGTTCAAGAGGATTTGTGTCTTCTGTGGTAGTAGCCCCGGCAAGAAAACTAGTTATCAAGATGCTGCCATTCAACTTGGCAACGAATTGGTCTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGATTGGTTTCACAAGCTGTTCATGATGGTGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCGAAGCATTCAGATGCTTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAAGAGCTTCTTGAAGTCATAACATGGGCACAACTTGGGATTCATGACAAACCGGTGGGACTAGTAAATGTTGATGGATACTTCAATTCTTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCAACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTATGTTCCTTGTCATGAGAGTGTTGCTTCCAAGTTGAGCTGGCAGATGGAACAGCAGCTTGCTTACCCTCAAGATTATGACATTTCAAGGTAG 660 0.4409 MDTRSEIMHSKFKRICVFCGSSPGKKTSYQDAAIQLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHESVASKLSWQMEQQLAYPQDYDISR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02376 219 PANTHER LOG FAMILY PROTEIN YJL055W 1 219 - -
Cca03g02376 219 TIGRFAM TIGR00730: TIGR00730 family protein 13 190 IPR005269 GO:0009691|GO:0016787
Cca03g02376 219 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Cca03g02376 219 Gene3D - 3 189 - -
Cca03g02376 219 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 1 219 - -
Cca03g02376 219 SUPERFAMILY MCP/YpsA-like 10 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02376 Cca-Chr3 44757875 44762112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02376 K22522 - gmx:100810030 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02376 03 44757875 44762112 Cca03g02376 03 44757875 44762112 ECH