Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02366 ATGATGAACACATCCAACGGCATGATGTCACCGTCGTCTTCATCGGCAACGGCACAGTCGCCTGGACTCAAGACCTATTTCAAAACCCCCGAGGGCCGCTATAAGCTTCAATACGAGAAAACTCACCCTTCTGGTCTTCTTCATTATGCCCATGGCAAAACCGTTACTCAGGTAACCCTGGCACATCTAAAAGACAAGCCTGCGCCTTCTACCCCAACCGCATCTTCTTCAAGTTTCAGTGCCAGCAGTGGGGTACGCTCGGCAGCGGCTAGATTGTTGGGAGGAAGCAATGGAAGCCGGGCACTTAGTTTTGTGGGAGGCAATGGCAGCAGCAAGAGCAATGGAGGAACCAGTAGAATTGGTTCCATTGGTGCCTCGAGTACAAGTAGTTCAATGGCTAATCCAAATTTTGATGGGAAAGGAACGTACTTGATCTTCAATGTTGGGGATGCAATTTTCATTAGTGATTTGAATTCTCAAGACAAGGATCCAATAAAGTCCATTCACTTCAGTAATTCAAATCCTGTGTGCCACGCATTTGATCAGGATGCCAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGtctactcagtgtcactgagacagcaattacaggatgttggtaaaaagcttgttGGAGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCTTGGGTGCCTGGAGGTGATGGTGCTTTCGTTGTTTCTCATGCCGATGGGAATTTGTACACATATGAAAAGAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAAGATCAAACTCAGTTTTCTGTTTCCCATGCACGTTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGTCAGGGTTCAATTAACAGTATTTCTTTCTCAATGGATGGGGCATACTTAGCAACTGTTGGACGTGATGGTTATTTGCGAGTGTTTGATTACGCAAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGcatggatggaaaatatattttgacgggaggggaagatgatttagttcaagtttggagcatggaagatcgcaaggttgtggcatggggtgagggacataactcatggGTCAGCGGAGTTGCTTTTGATCCATATTGGTCATCACCAAATTCAAATGATAATGGAGAGACCATTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACTTGGAAATGGATGAGATTGTAGTGCCGTTGAGGCGATGTCCACCTGGTGGGTCTCCGACTTACAGTGCTGGGAGTCAGTCATCCCACTGGGACAATGTTGTCCCATTGGGTACCTTACAACCTGCTCCAAGTATGCGGGATGTTCCAAAAATATCACCATTGGTTGCCCATCGAGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTTCTTACTGCCTGTCGGGAGGGGCACATTAAAATCTGGACGAGGCCTGGCACAGCCGAGAGCCAATCAAGCACGTCTGAAAATTTGTTAGCCACCAGTCTCAAAGAAAAACCTCCACTTTCAAGCAAGATCAGCAATTCTAGCTACAAACAATGA 1644 0.4088 MMNTSNGMMSPSSSSATAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKSNGGTSRIGSIGASSTSSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGDGAFVVSHADGNLYTYEKNKDGAGDSSFPVVKDQTQFSVSHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYAKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDPYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSAGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWTRPGTAESQSSTSENLLATSLKEKPPLSSKISNSSYKQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02366 547 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g02366 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 377 IPR001680 GO:0005515
Cca03g02366 547 Pfam WD domain, G-beta repeat 343 368 IPR001680 GO:0005515
Cca03g02366 547 Pfam WD domain, G-beta repeat 298 326 IPR001680 GO:0005515
Cca03g02366 547 SMART WD40_4 287 326 IPR001680 GO:0005515
Cca03g02366 547 SMART WD40_4 329 368 IPR001680 GO:0005515
Cca03g02366 547 SMART WD40_4 371 423 IPR001680 GO:0005515
Cca03g02366 547 SMART WD40_4 212 258 IPR001680 GO:0005515
Cca03g02366 547 SMART WD40_4 473 510 IPR001680 GO:0005515
Cca03g02366 547 Gene3D - 12 520 IPR015943 GO:0005515
Cca03g02366 547 MobiDBLite consensus disorder prediction 512 528 - -
Cca03g02366 547 MobiDBLite consensus disorder prediction 106 132 - -
Cca03g02366 547 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02366 547 MobiDBLite consensus disorder prediction 512 547 - -
Cca03g02366 547 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 544 - -
Cca03g02366 547 PANTHER WD REPEAT PROTEIN 3 544 - -
Cca03g02366 547 SUPERFAMILY WD40 repeat-like 138 510 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02366 Cca-Chr3 44639921 44647546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02366 303 430 Miscellaneous Gene Families AT5G08390 23.438 3.67e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02366 K24741 - gmx:100782580 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02366 03 44639921 44647546 Cca03g02366 03 44639921 44647546 ECH