Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02338 ATGAGAGATTTCGTCATCCTTGGCTCCTCCGTCGTAACTCCTccacccaacccccaacaccgccaccccatcaaaccccacAAGCCTTCCCTCCCAAAGCTCGCTCCTTTCTCTTCCTCTTCCGCCGTTTCCTGCGCCCCCCTCTCTCTCAGCCACCATGCTCCCTCCAGCAACCTCGTTCACCAATTCGAAACGCTCGCCGAGGACGCATTCGATTCCGCCGTCGACGCCGAGCTTCTGGCCAAGGTGGTTCTGCTGGGAGTTCGAGAGAAGAACGTTCGGACTGTGATTGACGCTCTCAACAAAGTGCAGGCTCGCGGGATTTCCTTGTCTCCTCATCTCCATGGCTCTGATGCCATTGCCAAGGAGTGTTGCCGCTTGGTCACGTGCGGACACGTTGAGGAGGCTGTTGAACTCATGGAGGTTCTCTCACGTTTTCAGTTATCAATCAGGGGACTTGTTCATCCGTCTGACATAATTAAACAATGTGTTCTTAGTCGAAACCCAATTTTAGCTGTGAGGTATGCATGTCTTCTTCCCCATGCACATATATTGTTCTGCAATATTATATCAGAATTTGGCAAAAGGAGGGATTTAGTTTCTGCTTTGAAAGCGTACGAGGCATCAAAGAAAAACCTGGATACTCCCAATATGTACATATACCGGGCAATAATTGATGCTTGTGGTCTTTGTGGTGATTACAGGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGCGAATGCCCGTGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGAACCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTCAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCAAGACATTTATAGGGATCTTAAGCATTTGGAATCAGAGGGACAGATAAAATTAGATGTCTTTACCTACAGCACAATTATAAAGGTATTTGCAGATGTGAAATTGTGGCAGATGGCTCTAAAAATCAAGGAAGACATGCTGTCTGCTGGTGTTTCTCTTAATACTGTTGCATGGTCATCGTTAATCAATGCCTGTGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCAGGCTGCGAACCTAATACACAGTGTTTCAACATCATTTTAAATGCATGCGTTGAAGCTTGCCAATATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAAAAAAATGTTAGGGTCATTTGGTGGAGGCTACAATAGCAATATAGGGCAGGGACGCATGCATAATGTGACTACTATGCCAAATGGCATTTCTAATTCGCACATCTTGAGTTGTGCTGAGAGGTTCCCTTTTACACCAACTACAACAACATACAATATTTTACTTAAGGCCTGTGGTACTGATTACTACCATGCAAAAGCATTAATCCAAGAGATGAAAGCAGTAGGTCTTTCCCCAAATCAAATTAGCTGGTCAATTTTGATAGATATATGTGGAGCATCAGCAAATGTGGAGGGTGCCTTTGAGATTTTGAAAACCATGGGTGATGCTGGAATTAAACCTGATGTTATTGCATATACAACAGCCATTAAGGTTTGCGTTGAAAGTAAGAATTTTATGCATGCACTAACATTATATGAAGAAATGAAAAGCTATGAGATACATCCAAATTGGGTTACATATAACACACTTCTGAAGGCCCGCAGTAAATATGGCTCCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGTAAGGCAGGGTACAAACCCAATGACTACTATCTGGAAGAATTGATTGAGGAGTGGTGTGAAGGAGTGATACAAGATAACACAGAGAAGCAAGGAGAATTTTCTTCCTGCAATAAATCTGAATTAGAGAGACCCCAAAGTTTGCTTCTTGAAAAAATTGCAGCTCACCTGCTAAAGAGGGTAGCCTACATCCTAGCAATTGATGTTCAAGGGCTCACAAAGGTTGAAGCACGTTTGGTTGTTCTAGCAGTTCTTCGAATGATCAAAGAGAATTACGGTGTAGGACATCCAGTAAATGATGATATCTTGATCATCATAGGAGCTACTAAAGTAGACGCAAGTCCAGCCAAACACATACTAGAAGTGCAAGAGTCAATAATGAAACTTCTCAGGAATGAGTTGGGGCTTGAAGTTCTTCCAGCCAGAACCAGAGTAGCATTAAGTAGCACAGCAAAGTTAGAGTACCCCAACCTTTCAAATCTCAACATAGAAGCATTACCAGGAGAGAATGCATTACCCACAACAAAAATGGGGTTTCAGACAAGGAGACCTGCAGTTCTTGTAAGGTTGAAGGTCACTAAAAAATCATTATACAGTTGGTTGCACCGGAAGTAA 2424 0.4158 MRDFVILGSSVVTPPPNPQHRHPIKPHKPSLPKLAPFSSSSAVSCAPLSLSHHAPSSNLVHQFETLAEDAFDSAVDAELLAKVVLLGVREKNVRTVIDALNKVQARGISLSPHLHGSDAIAKECCRLVTCGHVEEAVELMEVLSRFQLSIRGLVHPSDIIKQCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSALKAYEASKKNLDTPNMYIYRAIIDACGLCGDYRKSRYIYEDLLNQKITPNIYVFNSLMNANARDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRDLKHLESEGQIKLDVFTYSTIIKVFADVKLWQMALKIKEDMLSAGVSLNTVAWSSLINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEACQYDRAFRFFHSWKGKKMLGSFGGGYNSNIGQGRMHNVTTMPNGISNSHILSCAERFPFTPTTTTYNILLKACGTDYYHAKALIQEMKAVGLSPNQISWSILIDICGASANVEGAFEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMHALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSLHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQDNTEKQGEFSSCNKSELERPQSLLLEKIAAHLLKRVAYILAIDVQGLTKVEARLVVLAVLRMIKENYGVGHPVNDDILIIIGATKVDASPAKHILEVQESIMKLLRNELGLEVLPARTRVALSSTAKLEYPNLSNLNIEALPGENALPTTKMGFQTRRPAVLVRLKVTKKSLYSWLHRK 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 219 253 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 288 313 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 397 424 IPR002885 -
Cca03g02338 807 TIGRFAM PPR: pentatricopeptide repeat domain 505 539 IPR002885 -
Cca03g02338 807 Gene3D Tetratricopeptide repeat domain 315 448 IPR011990 GO:0005515
Cca03g02338 807 Gene3D Tetratricopeptide repeat domain 184 314 IPR011990 GO:0005515
Cca03g02338 807 Gene3D Tetratricopeptide repeat domain 456 650 IPR011990 GO:0005515
Cca03g02338 807 Pfam PPR repeat family 359 406 IPR002885 -
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Cca03g02338 807 Pfam PPR repeat 326 356 IPR002885 -
Cca03g02338 807 PANTHER OS03G0284900 PROTEIN 67 798 - -
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Cca03g02338 807 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 67 798 - -
Cca03g02338 807 MobiDBLite consensus disorder prediction 9 29 - -
Cca03g02338 807 Pfam Pentacotripeptide-repeat region of PRORP 193 313 IPR033443 -
Cca03g02338 807 Pfam Pentacotripeptide-repeat region of PRORP 478 618 IPR033443 -
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Cca03g02338 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 610 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02338 188 630 Glycosyltransferase AT1G05670 21.674 1.86e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02338 - - gmx:100794606 1373.22