Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02323 ATGCCTCGCTATGATGATAAATATGGCAATACCCGCCTTTATGTTGGACGCTTGTCTTCAAGGACTCGTTCCCGTGATTTGGAGCGTGTCTTCAGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGCATGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCTGATGATGCTAGATATAACTTGGATGGCCGTGACGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAAGGAGGTCCTCGTGGATCCCGGGAATACTTGGGTCGGGGTCCTCCTCCTGGATCTGGACGTTGCTTTAACTGTGGCATTGATGGTCATTGGGGACGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAAAGAGGTCATATTGAAAAGAACTGTAAGAACAGCCCCAAAAAGTTGAGCAGACGTGGACGGAGCCTTtcccgctcaccagtcaggtcacgctcaccagtcaggtcacgctcaccagtcaggtcacgtTCTCCTCGTCGTGGGAGAAGCCGGGATAGAAGCTACAGCCGAGACCGTAGCTACAGCCGATCAAGATCTCCTGTCAGAAGAGAACGAAGCCCGGTTTCTGAAGATAGATCACAGAGTCCTCTGCCCTCCAAGACAAGGAAGCATAGTGCATCACCTGACCAAAGCAGCCCACCGAAGAGAGGTGACACATCTCCTGGTAATGATAGGTTGGTCACTCGGCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGGAAAAAGTAGAAGTCCTGCAAGGGACCGCGATGAGGGCGGCTATGATAGCCCTAAAGCTAATGGGCGTAGTAGGAGCCCAAGCCGGAGTCCAAGGGATGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGCCACTCTCAGTCACCTTAA 921 0.4691 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRGVDMKHDFAFVEFSDPRDADDARYNLDGRDVEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWGRDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSLSRSPVRSRSPVRSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPVRRERSPVSEDRSQSPLPSKTRKHSASPDQSSPPKRGDTSPGNDRLVTRQDGSDYSDGPRGKSRSPARDRDEGGYDSPKANGRSRSPSRSPRDDDRSPIDEDDDNHRHSQSP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02323 306 MobiDBLite consensus disorder prediction 176 204 - -
Cca03g02323 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 169 - -
Cca03g02323 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 163 286 - -
Cca03g02323 306 MobiDBLite consensus disorder prediction 134 306 - -
Cca03g02323 306 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 169 - -
Cca03g02323 306 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 163 286 - -
Cca03g02323 306 MobiDBLite consensus disorder prediction 205 243 - -
Cca03g02323 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Cca03g02323 306 Gene3D - 120 154 - -
Cca03g02323 306 Gene3D - 91 119 - -
Cca03g02323 306 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Cca03g02323 306 MobiDBLite consensus disorder prediction 249 272 - -
Cca03g02323 306 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Cca03g02323 306 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Cca03g02323 306 Gene3D - 3 89 IPR012677 -
Cca03g02323 306 SMART rrm1_1 12 77 IPR000504 GO:0003723
Cca03g02323 306 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Cca03g02323 306 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Cca03g02323 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Cca03g02323 306 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Cca03g02323 306 MobiDBLite consensus disorder prediction 280 306 - -
Cca03g02323 306 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Cca03g02323 306 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02323 Cca-Chr3 44224509 44227877 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02323 K12896 - gmx:100813237 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02323 03 44224509 44227877 Cca03g02323 03 44224509 44227877 ECH