Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02314 ATGGATCAACGCACCCCTCTCTCCGACCCCTCCACGCCCACAACTCCCAGGTCCACCTTCTTCCTCTCCACCTCCGGCAAGGCCCTCCTCCTCTCCAACTCCGCCAAGCGCCCCGACACTCCCCGCAAGAAGTATGTCAAGCAGGTCACCGGCCGCCACAACGACACCCACCTCCACCTCGCCGCCCAGCGCGGCGACGCCGCCTCCGTCCGCACCGTCCTCGCCGAGATCGACTCCCTCATGATGGGCACCTTCGAGTTCGACGCCGAGGTTGCCCACTTTAGGTCCGCCATCTTCAACGAGGTCAACGACTTGGGAGAAACCGCGCTCTTCACCGCCGCCGAGAAGGGCCACCTCGACGTCGTCAAGGAGCTCCTCCCTTATGCCACCGCCGAGGCTCTTTCCGTCAAAAACCGCTCCGGTTTCAACCCCTTGCACATTGCCGCTAGCCAGGGTCATCTTGCCATTGTGCAGGTGCTACTAGACCATGAGCCTGGGATGATTAAAACGTTTGCGCAGTCAAATGCAACTCCTCTAATATCTGCAGCTACACGAGGGCATGCAGATGTTGTTGAGGAGTTGTTGTCTCGGGATCCTACTCAGTTGGAGCTGACTAGGTCCAATGGAAAGAATGCACTCCATTTAGCTGCACGCCAGGGACATGTAAATGTTGTAAAGATACTTCTCAAGAAGGATCCACAACTTGCTCGAAGAACTGATAAGAAAGGGCAAACTGCACTACACATGGCTGTCAAAGGGGTTAGTTGTGAAGTGGTGAAGCTGATTCTTGCTGCGGATGCAGCCATTGTCATGCTTCCCGACAAGTTTGGCAAAACTGCATTGCATGTAGCCACGAGGAAGAAGAGGGTAGAGATAGTGAATGAGCTGTTACTTCTTCCCGACACCAATGTAAATACCTTGACAAAAGACCACAAGACAGCTCTTGACCTTGCGGAGGGGCTTCCAATATCCGAGGAAATTCTGGAGATCAAAGAGTGTCTGATTCGTTACGGTGCAGTTAAAGCCAATGATCTGAACCAACCAAGGGATGAGCTAAGGAAAACCATGACGCAGATCAGGAAAGATGTTTATTTTCAGCTGGAACAAACTCGTAGAACAAACAAGAACGTGAGTGGGATTGCCCATGAGCTAAAGAAGTTGCACAAAGCTGGAATCAACAATGCTGCCAACTCAGTAACGGTGGTTGCTGTGCTATTTGCAGCAGTTGCATTTGCAGCAATTTTCACAGTTCCTGGTGGGGACTATGAAAATGGGGTGGCAGTGATGGCACACACAGCGTCTTTCCAAGCCTTCTTCATATCCAATGCCATTGCACTATTCACATCATTAGCTGTGGTTGTGGTTCAAATCACAGTTGTTAGAGGGGAGTTAAAGGCTGAGAGAAAAGTTGTGGAGGTGATCAACAAGATGATGTGGTTAGCCTCTGTGTGCACCTCAGTTTCGTTCATTACAGCATCTTATATAGTAGTTGGTCGGCACAGTCCTTGGGCTGCAATTCTTGTTACCGTTGTAGGGGTCATCGTAATGGGTGGTGTTCTTGGTACCATGACATACTATGTGGTCAAATACAAACGCTCCCGAAGAGTGAGGAAGAAAGACAAGATATCTAAGACGGATTCCGATTCTGATGAGCCAGAAGTAAATCCAATCTATGCCATTTGA 1683 0.5051 MDQRTPLSDPSTPTTPRSTFFLSTSGKALLLSNSAKRPDTPRKKYVKQVTGRHNDTHLHLAAQRGDAASVRTVLAEIDSLMMGTFEFDAEVAHFRSAIFNEVNDLGETALFTAAEKGHLDVVKELLPYATAEALSVKNRSGFNPLHIAASQGHLAIVQVLLDHEPGMIKTFAQSNATPLISAATRGHADVVEELLSRDPTQLELTRSNGKNALHLAARQGHVNVVKILLKKDPQLARRTDKKGQTALHMAVKGVSCEVVKLILAADAAIVMLPDKFGKTALHVATRKKRVEIVNELLLLPDTNVNTLTKDHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIRKDVYFQLEQTRRTNKNVSGIAHELKKLHKAGINNAANSVTVVAVLFAAVAFAAIFTVPGGDYENGVAVMAHTASFQAFFISNAIALFTSLAVVVVQITVVRGELKAERKVVEVINKMMWLASVCTSVSFITASYIVVGRHSPWAAILVTVVGVIVMGGVLGTMTYYVVKYKRSRRVRKKDKISKTDSDSDEPEVNPIYAI 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02314 560 Gene3D - 28 197 IPR036770 -
Cca03g02314 560 ProSiteProfiles Ankyrin repeat region circular profile. 242 269 - -
Cca03g02314 560 SMART ANK_2a 105 136 IPR002110 GO:0005515
Cca03g02314 560 SMART ANK_2a 208 237 IPR002110 GO:0005515
Cca03g02314 560 SMART ANK_2a 242 271 IPR002110 GO:0005515
Cca03g02314 560 SMART ANK_2a 140 169 IPR002110 GO:0005515
Cca03g02314 560 SMART ANK_2a 53 82 IPR002110 GO:0005515
Cca03g02314 560 SMART ANK_2a 276 306 IPR002110 GO:0005515
Cca03g02314 560 SMART ANK_2a 174 203 IPR002110 GO:0005515
Cca03g02314 560 PANTHER CASKIN 24 549 - -
Cca03g02314 560 ProSiteProfiles Ankyrin repeat profile. 242 274 IPR002110 GO:0005515
Cca03g02314 560 Pfam Domain of unknown function 391 496 IPR026961 -
Cca03g02314 560 ProSiteProfiles Ankyrin repeat profile. 140 163 IPR002110 GO:0005515
Cca03g02314 560 ProSiteProfiles Ankyrin repeat profile. 276 309 IPR002110 GO:0005515
Cca03g02314 560 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 24 549 - -
Cca03g02314 560 ProSiteProfiles Ankyrin repeat region circular profile. 140 163 - -
Cca03g02314 560 Pfam Ankyrin repeats (3 copies) 179 266 IPR002110 GO:0005515
Cca03g02314 560 Pfam Ankyrin repeats (3 copies) 58 163 IPR002110 GO:0005515
Cca03g02314 560 Gene3D - 198 356 IPR036770 -
Cca03g02314 560 SUPERFAMILY Ankyrin repeat 58 338 IPR036770 -
Cca03g02314 560 ProSiteProfiles Ankyrin repeat region circular profile. 208 231 - -
Cca03g02314 560 MobiDBLite consensus disorder prediction 539 560 - -
Cca03g02314 560 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02314 Cca-Chr3 44114029 44116835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02314 8 560 Miscellaneous Gene Families AT3G09550 68.313 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02314 - - gmx:100801840 874.389