Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02307 ATGGCCATAGCCGCCACCATTTCCGCTCCTCTCACATCTCCGACTCGCCGCACTCTCGCCGCCGTCAACACGCTCTTTCCCCATTCTAGCAGATCCACTTTGCCCACACCGCAACGCGCTTTCAAATACCCTAACTCTCGCCTCGTCGCCTCCTCCATGAGCACCGACGCTCCCGTCAAAACATCCTCCGCCTCCTTCATCCACCGCGGAGAGGCCGGCTTTCTCCACTTCGCCAAGTACCACGGCATCGGAAACGACTTCATTTTGATTGACAACAGAGACTCGTCCGAGCCCAGGGTGAGTCCGGAGAAAGCGGTGGAACTGTGTGATCGGAACTTCGGTGTCGGAGCTGACGGGGTTATCTTTGTCTTGCCTGGCATCAACGGCACCGATTATACCATGAGGATTTTTAACTCCGATGGCAGTGAGCCTGAGATGTGTGGCAATGGAGTCCGGTGCTTCGCGAAGTTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGTTTCACCATACATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGACATGGGGGAACCAATTCTTAAAGCCTCAGAAGTGCCTACTAAGATACCTGCAAATAAGGATATTGCTGTTGTTAAATCAGAGCTAGTTGTAGATGGAGTTATCTGGCATGTGACCTGTGTTAGCATGGGAAATCCACACTGCATAACTTTCAGTAGAGAAGGAAGCCAGAATTTGCTTGTTGATGAAGTGAACCTGGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGGACTAACACAGAGTTTGTGCAAGTATTGTCTAATTCTCACCTTAAAATGCGTGTTTGGGAGCGTGGGGCAGGTTAG 894 0.5011 MAIAATISAPLTSPTRRTLAAVNTLFPHSSRSTLPTPQRAFKYPNSRLVASSMSTDAPVKTSSASFIHRGEAGFLHFAKYHGIGNDFILIDNRDSSEPRVSPEKAVELCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPILKASEVPTKIPANKDIAVVKSELVVDGVIWHVTCVSMGNPHCITFSREGSQNLLVDEVNLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02307 297 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 210 297 - -
Cca03g02307 297 SUPERFAMILY Diaminopimelate epimerase-like 219 297 - -
Cca03g02307 297 ProSitePatterns Diaminopimelate epimerase signature. 138 152 IPR018510 GO:0005737|GO:0008837|GO:0009089
Cca03g02307 297 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 37 297 IPR001653 GO:0008837|GO:0009089
Cca03g02307 297 TIGRFAM DapF: diaminopimelate epimerase 76 297 IPR001653 GO:0008837|GO:0009089
Cca03g02307 297 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 37 297 - -
Cca03g02307 297 Pfam Diaminopimelate epimerase 231 297 IPR001653 GO:0008837|GO:0009089
Cca03g02307 297 Pfam Diaminopimelate epimerase 77 197 IPR001653 GO:0008837|GO:0009089
Cca03g02307 297 Hamap Diaminopimelate epimerase [dapF]. 75 297 IPR001653 GO:0008837|GO:0009089
Cca03g02307 297 SUPERFAMILY Diaminopimelate epimerase-like 75 204 - -
Cca03g02307 297 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 49 206 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02307 K01778 - gmx:100784731 555.058