Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02268 ATGGAGAATTCTTCCGAGGCGCTCGGTTCCAAAGGCTTGATCAATAGGCATGAATTCGTGAGGATCATAATCCAGTGCCTGTATTCATTAGGGTACAGCAACTCCGCCTCGTGTTTGGAATCGGAGTCTGGTGTCTCGTACTGGTCCAACGAGTTTCAGTTACTTGAATCGCTTATACTCAACGGGAACTTGGGCGATTGCATCGATTATCTCAATTCCATAAAGGATGTGTTGGGTGAAACCGCGGAATCCGCACTGTTTCTTGTCTTCAGGCAGTGTGTGATGGAGTATCTGAATTGCGGTGAGGACGCGTTGGCCTTGGGGGTGTTGAGGAAGCAGGTTTCGGCCTTGGATGTGGACAAGTACAAAGTTCACGGTTTGGCTACGTGCTTGCTTTCGTTGAAGGATAGGGAGTTGGGTGCGGTTGTTGGCAGTGGTGGTGATGTTGTTGTGCATGATTTGAGGAGAAAATTGTTGGGGGATTTGGAGAAGTTGTTCCCTCCTCCAATTGTCGTGCCTGAAGCAAGGCTGGAGCACTTGGTGGAAAGTACTGTTACTGCCTGGGTGGATGCGTGTATGTATCATAGTTCATCGAATACGGTTTCGCTTTATGAGGATCATTGCTGCAGCAGGGATGAGATTCCTACAACGACGACTCAGATATTGACTGGACATAAAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGGGAGTACCTAGCCTCTTCATCCAATGATTGCACAGCCATCATATGGAAGGTGCTGGAGGATGGAAAATTGACATTGAAACATACACTTTGTGGTCACCAACAGGCTGTATCTTTTTTAGCATGGAGTCCTGATGACACCAAGTTGCTTACATGTGGTAACACGGAAGTTTTAAAGCTGTGGGATGTTGAAACAGGTACATGCAAGCAAACATTCGGGAATCAAGGCTTTGTTGTCAGCTGTTGTGCCTGGTTTCCCAACTCAAAACAGTTTGCGTGTGGCAGTTCTGACCCCGAGAAGGGTGTCTGCATGTGGGATTGTGAAGGAAATGTGATCAAATCATGGAGAGGAATGAGGATGCCCAAAGTCGTAGATCTTGCTGTTACTCCAGATGGCGAGTATCTTATCAGCATATTCGTGGACAAAGAAATTCGAATTCTGCATATGGCAACCAATACTGAGCAAGTTATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGATAGTAAGTTGTTCATTGTCAATCTAAACAGCCAAGAGATTCATATGTGGGATGTGGCCGGGAAATGGGAAAAGCCCCTGAGGTTTATGGGCCACAAGCAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTGAATAACACATTTATCGCCAGTGGTAGTGAGAATTCAGAGGTATACATTTGGAACTGCCGGAACTCGAGGCCTATAGAGGTTCTATCTGGGCACTCCACGACTGTTAACTGTGTGAGCTGGAACCCCAAAATGCCACAAATGTTGGCATCTGCAAGTGATGATCATACAATTCGTATATGGGGACCCAGCTTAAAAAAAAAGAAGGCAACATGA 1572 0.4548 MENSSEALGSKGLINRHEFVRIIIQCLYSLGYSNSASCLESESGVSYWSNEFQLLESLILNGNLGDCIDYLNSIKDVLGETAESALFLVFRQCVMEYLNCGEDALALGVLRKQVSALDVDKYKVHGLATCLLSLKDRELGAVVGSGGDVVVHDLRRKLLGDLEKLFPPPIVVPEARLEHLVESTVTAWVDACMYHSSSNTVSLYEDHCCSRDEIPTTTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGKLTLKHTLCGHQQAVSFLAWSPDDTKLLTCGNTEVLKLWDVETGTCKQTFGNQGFVVSCCAWFPNSKQFACGSSDPEKGVCMWDCEGNVIKSWRGMRMPKVVDLAVTPDGEYLISIFVDKEIRILHMATNTEQVISEEHPITSLSVSGDSKLFIVNLNSQEIHMWDVAGKWEKPLRFMGHKQHKYVIRSCFGGLNNTFIASGSENSEVYIWNCRNSRPIEVLSGHSTTVNCVSWNPKMPQMLASASDDHTIRIWGPSLKKKKAT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02268 523 SMART ctlh 48 105 IPR006595 -
Cca03g02268 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 255 IPR001680 GO:0005515
Cca03g02268 523 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 51 105 IPR006595 -
Cca03g02268 523 PANTHER WD REPEAT-CONTAINING PROTEIN 26 7 521 - -
Cca03g02268 523 Gene3D - 206 515 IPR015943 GO:0005515
Cca03g02268 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 303 - -
Cca03g02268 523 CDD WD40 219 513 - -
Cca03g02268 523 SUPERFAMILY WD40 repeat-like 213 513 IPR036322 GO:0005515
Cca03g02268 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 523 - -
Cca03g02268 523 SMART Lish 15 47 IPR006594 GO:0005515
Cca03g02268 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 255 - -
Cca03g02268 523 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Cca03g02268 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Cca03g02268 523 Pfam WD domain, G-beta repeat 303 342 IPR001680 GO:0005515
Cca03g02268 523 Pfam WD domain, G-beta repeat 477 513 IPR001680 GO:0005515
Cca03g02268 523 Pfam WD domain, G-beta repeat 263 299 IPR001680 GO:0005515
Cca03g02268 523 Pfam WD domain, G-beta repeat 219 254 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 429 471 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 387 425 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 302 343 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 260 299 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 474 514 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 215 254 IPR001680 GO:0005515
Cca03g02268 523 SMART WD40_4 345 385 IPR001680 GO:0005515
Cca03g02268 523 PANTHER WD REPEAT PROTEIN 26-RELATED 7 521 - -
Cca03g02268 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 513 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02268 Cca-Chr3 43554927 43561674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02268 220 373 Miscellaneous Gene Families AT5G08390 29.870 1.33e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02268 K22382 - gmx:100818922 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02268 03 43554927 43561674 Cca03g02268 03 43554927 43561674 ECH