Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02267 ATGACGGGATTCGCTCGCCCTCGCGATCACGCTTCTTCTTCCTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTTAATTTGCTTGCGAGGAGAGAGATATCACCCCGATCAAAATACGTGGCTAAGTGGCATTGGGGAGAAGCTTCGAAGTCAAAGTCTAGTCCTTATTCTCGTCCTAAAAATGAAGTTGTGAGAGATGCAAGGCGTGGTCTCCTTTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCAGCAAAGTATTGCCCTTTATTGCCTCCTCCACGGTCTACTATTGCAGCAGCATTTAGTTCAGATGGGAAAGTTCTTGCCTCCACTCATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGTTTAAAGGTGTTAGTTGGCCATAGGAGGACACCGTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGTTTGGATCAAGAAGTTCGTTTATGGGATGCTAACTCATCAGAGTGCATAATATCTCATCATTTCTATCGCCCCATTGCATCCATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCAGGCCACAAGTTGTACATATGGCACCACAACAAGAAAGGTGAAGCATCCTCACCAGTATTTGTGTTGAAGACTAAGCGCTCACTTAGGGCAGTGCATTTTCACCCACATGCTGCACCATATCTTTTAACTGCAGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACGGAGGCAACATCTCTTGGTTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATCCTACAGAACATATTAGTTTGTCCAGTGAACTACCTTATGTGTCATTACCTTTCTTCTTTATGCCCTCATATCCCGCCGATGAGTCAAGAGCAGAACTACAGCATGCTAGTCATGATGTTGGCTCAGGTAGCATGCAAATTGAGTCTTCTGCCATGGTACAGATACAAGCGGACACAAGTGCAACAGAGCAATATGAGACTACAGTGGCTCCCATGGATACATTCTCTGAGATGCCCACCAGCTCTCAAACTGGTACAGAATATCCTGCTCATACTTCTTTCTCTAATGGAATGGGAATTGGCCTTAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTACTGAAGGAAGCCAGCATGGAAATTCTACTAATACCTATTCTCTGAATGGCATACTAAATGGACTGTCAAGGCAAACTGCAAACCGCGGGGCTCACTCAGAGTTTGGTCAATTTCATCAGTTTTTTCCTTCAAGTTCAAGAGATCCAGGTGGATGGGAGTTGCCTTTTCTCCAAGGATGGTTAATGGGTCAAAGTCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGTTAGTCGCGATGTTCTGGCCCAACAGATTGGTTCTTCCACAATGGCATCCACTTCTAATGTTGATGCAGCAATGCCATCTTCAGCAATACCTGGTTCTTCAATGAGGTCAGGTTTACGGAATCATTTTTCACAATTCCGTGTACCTGTACCTGAATCTGGCAATCTTGCTGCTTCTGTTAATACCTCACATGATGGATCCGATATCCAAGCCATCATAAGTCGAATTCAGTCAGAACTTGCTACATCAGTGGCTGCTGCAGCAGCGGCAGAGTTGCCTTGCACTGTGAAGTTAAGAGTATGGTCGCATGACATAAAATATCCCTGTGCCCCCCTCAATGCCGACAAATGCCGTCTAACAATACCGCATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCAGGATTACATACTCCAGTACACCAAGATCCTGGTGTTGCAACATCGCCAACTCGACATCCAATCTCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGCTCGGTGCTTGCTTCACGGGCAATTAGAGCAGCTCATTGTCTAACTTCAATTCAGTTCTCTCCTACATCTGAGCATATACTACTTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCCATATACACAGTGTTAGAGGTATACAGAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGTTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGAGTCCTCCAGTATGACGGTGCTCATGCAGTGAGTGGCACTGGACCAAGTTACTTTCCTGAGGAGACCATCATTGGGGTCAGTCAGTGA 2385 0.4486 MTGFARPRDHASSSSHNSNSSGSNVFNLLARREISPRSKYVAKWHWGEASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANSSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPVFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPTEHISLSSELPYVSLPFFFMPSYPADESRAELQHASHDVGSGSMQIESSAMVQIQADTSATEQYETTVAPMDTFSEMPTSSQTGTEYPAHTSFSNGMGIGLSNLTMDGMETDETRPTEGSQHGNSTNTYSLNGILNGLSRQTANRGAHSEFGQFHQFFPSSSRDPGGWELPFLQGWLMGQSQVGVPSMLPHMGVSRDVLAQQIGSSTMASTSNVDAAMPSSAIPGSSMRSGLRNHFSQFRVPVPESGNLAASVNTSHDGSDIQAIISRIQSELATSVAAAAAAELPCTVKLRVWSHDIKYPCAPLNADKCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLHTPVHQDPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVSGTGPSYFPEETIIGVSQ 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02267 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 175 IPR001680 GO:0005515
Cca03g02267 794 Pfam WD domain, G-beta repeat 127 166 IPR001680 GO:0005515
Cca03g02267 794 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 94 771 IPR011047 -
Cca03g02267 794 MobiDBLite consensus disorder prediction 7 23 - -
Cca03g02267 794 Gene3D - 81 255 IPR015943 GO:0005515
Cca03g02267 794 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 793 - -
Cca03g02267 794 SMART WD40_4 169 206 IPR001680 GO:0005515
Cca03g02267 794 SMART WD40_4 729 769 IPR001680 GO:0005515
Cca03g02267 794 SMART WD40_4 126 166 IPR001680 GO:0005515
Cca03g02267 794 SMART WD40_4 85 123 IPR001680 GO:0005515
Cca03g02267 794 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g02267 794 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Cca03g02267 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 171 - -
Cca03g02267 794 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02267 Cca-Chr3 43544135 43552933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02267 100 267 Miscellaneous Gene Families AT5G08390 25.414 3.72e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02267 - K17985 gmx:100817857 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02267 03 43544135 43552933 Cca03g02267 03 43544135 43552933 ECH