Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02265 ATGGCGGATTTGGAAAATTTACTTTTGGAGGCAGCAGGGAGAACCCGACACTCTCATCCGCCTTCAAGAGGACATGATCATTGTCGGAGTGACTCTGGAGGGGATGATTCAGATGACGAGCATAATTATTCGGGCCGAAAGCCCCCTGGCTCGCAAGTTCCCCTAAAGAAGAGATTTGATTCGGAAAGAGATGATGGGGAGGGAAGTCAGGAAGGAGGGGATGATGATATTGGTGATAGCAGTGATGAATCTGATATTGGTGATGATCTTTATAAGAATGAAGATGACAGGCGTAAGCTTTCTGAGATGACTGAACTTCAGAGGGAGATGATATTGTCAAACAGGGCTACCAGGAAAAATGATAAAGATTTATTGGGGAAGTTAGCCTCAAAGCGGGAGAAGGGAAATACAACTTTAGTCGGGAAACTGACTACACCTCACCAGTCATCTCGTGTGCGTTCATCAGCCAGGTCAACAGCCAAGGATGGTGCTTTGAATGAATTGCGTGCGAAAAGATTAAAGCAGCAAGATTCAGAAACAAACCGCAGGATAAGTGAGGCATCTAGAAGTTCAGGGGCTAGGCATGTTTCACCGAAGCGCAAACCTTTCCCTTCAACAATTCCTGGTAGCTCAAGTGATAGTGAAAGTAGGTCCGACAGTGATGATGATGGGTCAAGTGGAGATGACAGAATTATTGACAGTGATGATGACAGGATAATGTTAGGATCTGAAGGGCTTTCATTTGAGGATATAAAAGAAATCACCATTCGCAGATCAAAACTTGCAAAATGGTTTATGGAGCCCTTTTTTGAGGAGTTAATTGTTGGTTGTTTTGTGAGAGTTGGCATTGGTAGATCAAAGTCAGGGCCTATCTACAGGCTCTGCATGGTTAAAAATGTTGATGCCTCAGATCGTGATCGACAGTATAAATTAGAAAATAAAACCACGCACAAGTACTTAAATCTTGTCTGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGATTAGCGACTCTCCTCCACTCGAGGAGGAGTTCAAACAGTGGCTGAAGGAAGTAGAGCGAAGAGGTGGCAGGATGCCAACAAAGGAAGAAGTGGTAGATAAAAAAGAAGCTATACAAAAGATCAAATTATTTGTTTACTCAGCAGCTACTGTGAAGCAGATGTTACAAGAAAAAAAATCTACCAAATCAAGGCCACTAAATATTGCAGCTGAAAAGGATCGGTTAAGGACAGAATTGGATATAGCACTTAGTAAGCATAAAGAAGCCGAAGCAAATAGGATCACGAAAAGATTGCAAGAATTAGAGGAATCTCGGAAAACTAGGGAGAAGGATGCCAGGGCTTTGAAGCTTGCTGAGATGAACAGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAATTGAAGCCAAATATTGGTTTGAAAGCAGGAGAGGTAGGTCATGATCCCTTTTCAAGGAGATGGACTAGATCAAGGAACTATTATGCTGCAGAATCAGCTGAAGAGGCTGCAGCTGAAAAAAATAGTGCTGACGAGGCTGTGGCTGATACAGGCATGGGAGCAGCTGAAACAGCGGAAGTTGGTATGGTGGCTACTGCTGTGGCTTTGGAAGCTGCTGCAGGTGCTGGAAAGTTGGTAGACACAAGTGCTCCGGTAGATCAAGGGACAGAGTCAAATATGCTGCATAATTTTGAGCTGCCAATATCATTAGCTATTCTCCAAAACTTTGGTGGAGCCCAAGGAGTTCGGGCAGGATTTATGGCACAAAAACAAAGAATAGAAACAACCATTGGATTCCAAGTCCTGGAAAATGATGGAGCGAGGCATGCGCTGACATTAACAGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTTTGA 1890 0.4339 MADLENLLLEAAGRTRHSHPPSRGHDHCRSDSGGDDSDDEHNYSGRKPPGSQVPLKKRFDSERDDGEGSQEGGDDDIGDSSDESDIGDDLYKNEDDRRKLSEMTELQREMILSNRATRKNDKDLLGKLASKREKGNTTLVGKLTTPHQSSRVRSSARSTAKDGALNELRAKRLKQQDSETNRRISEASRSSGARHVSPKRKPFPSTIPGSSSDSESRSDSDDDGSSGDDRIIDSDDDRIMLGSEGLSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDRDRQYKLENKTTHKYLNLVWGNETSAARWQMAMISDSPPLEEEFKQWLKEVERRGGRMPTKEEVVDKKEAIQKIKLFVYSAATVKQMLQEKKSTKSRPLNIAAEKDRLRTELDIALSKHKEAEANRITKRLQELEESRKTREKDARALKLAEMNRKNRFENFKNASELKPNIGLKAGEVGHDPFSRRWTRSRNYYAAESAEEAAAEKNSADEAVADTGMGAAETAEVGMVATAVALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLAILQNFGGAQGVRAGFMAQKQRIETTIGFQVLENDGARHALTLTVSDYKRRRGLL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02265 629 Coils Coil 409 455 - -
Cca03g02265 629 SMART rtf1 245 357 IPR004343 GO:0003677
Cca03g02265 629 MobiDBLite consensus disorder prediction 137 161 - -
Cca03g02265 629 MobiDBLite consensus disorder prediction 1 234 - -
Cca03g02265 629 ProSiteProfiles Plus3 domain profile. 245 380 IPR004343 GO:0003677
Cca03g02265 629 MobiDBLite consensus disorder prediction 10 45 - -
Cca03g02265 629 PANTHER UNCHARACTERIZED 1 629 - -
Cca03g02265 629 MobiDBLite consensus disorder prediction 215 234 - -
Cca03g02265 629 PANTHER PLUS-3 DOMAIN PROTEIN 1 629 - -
Cca03g02265 629 Pfam Plus-3 domain 250 355 IPR004343 GO:0003677
Cca03g02265 629 MobiDBLite consensus disorder prediction 85 105 - -
Cca03g02265 629 MobiDBLite consensus disorder prediction 164 184 - -
Cca03g02265 629 SUPERFAMILY Plus3-like 247 377 IPR036128 GO:0003677
Cca03g02265 629 Gene3D - 246 378 IPR036128 GO:0003677
Cca03g02265 629 MobiDBLite consensus disorder prediction 112 130 - -
Cca03g02265 629 MobiDBLite consensus disorder prediction 67 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02265 Cca-Chr3 43527291 43530020 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02265 K15178 - gmx:100793184 858.596