Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02263 ATGGACTCAAAAGAAGAGGCTGAGCCTCAAGAGGAGAGGCCCTCATCGCCAATGCGGGTCCTGCAGCAGTTATCTGAGGGGGCATTCAGAGTTGCTGGGGAAGCATTTCACAATATGTACACAGGTGGTGGGTCAGGCATGTCACCCATGGGGCCAGGTTCACATAGACGTAGTCAAAGTGAACTTGTCACTAGAGGATATCAGCGTACTCAGAGCCTTCAGAAATTGAAATCTCATGTGAACAAGGCTTGGCGCTGGGGTGGCAAAACGCGTGAAGAATGTTTGTCGAGTTTCAATCCTGAGGTCATGGCGAACCAGAAACGTCAGTGGTATCAGCTTCATCCTAAAACTCTGGAGTGTGTAAATTATAAGGAGCCAACATCGCTCTTTGAACATTTTGTGATTGTGGGGCTGCATCCAGATGCTAATTTGGAAGCCGTGGAGCATTCATTTGCAGGAAGGAAGAAGTGGGAAAAAGAGAAGGAAAAACTTGAATTTCTAGATTACAAAGTGCTAGAGCAACAAAGGTCACCAGAACCAATTTTGGAACCTCAGTTACTATTCAAATATCCTCCTGCTAAGAAGCTAACAATGCGTATGACGGATTTATCTTCCTTTTGCTTTCCTGAAGGTGTTAAGGCAAGGTTGTTGGAGAGGACTCCATCTCTAAGTGAACTGAATGAACTTGTCTATGGACAGGAGCATTTAGGCAAAGATGATCATTCATTCGTCTTCACAGTCAAGGCAACAGACAATACAACACTTTATGGAGTTTGCTTACATGTGCCTGAAATTGTTCAGAGGCCCCCTGGTATCTTAGGCATACCATCTTCTTTTTCTCACCCCTCTGGAGGATGCAGCCGTTTTCTGGTTTCTGCGCCTCGCTGTTACTGTCTTCTGACTAGAGTTCCTTTCTTTGAGTTACATTTTGAGATGTTAAACAGTCTCATTGCACAGGAGCGTCTGAATCGGATAACTCAGTTTATAAACGAGATGACTCTCACTAGCTGCATTCCATCAACAGCCAAACTAGATGATCAAAGGAGTTCAAATGCTTACTCCCCAGATAGGGAGTCATTTAGTGACTGGATGAATTGTGCCATACctgttgatggtgcagctgtgatttctgctgctgctgctgGGATTATATCTGATGATGAAATGCTGCAGTTATCACCTAAAATATGGGATTCTCGCTGTCAATCTCCTGTAAGTGTGACTGCCAGTGATACATCAGATTATTTTCAATATAGGGACATAGACAAGGATGGCAGGAAGAATCTGCAAGATCAAGACAATTGTGCTTTTGAGACACTAGAAACTCATGATTCTATGGAAAGAATGCATGGAAATTGCGAAAATGATCAAGTTTCTCCAAAAGTTGGAACACCCTTATCTGCTCGGAGTAATGTCTTGGACCATCTTGGAAGTTCTGAATCACTTTTCAGTCCAGTTAGAAGCATGGCATCAGAAGATGAGGACTATGTTTTCGCAAACAGTGAAAGAGATTATGGGAACAAGTTGTTAATGGAACAGGCTACGGAGAATCAGAATGATTTGCTACAGATAGTGTGTAGATACCATGACCAACCTATTCCACCTAGAGGAAGTGAATTTGTTTTCCACCCTCTTGAACATCTGCAACCTATTCAGTATATACGACATTCAGCTTCTTCTCTTGGCTTAAACGATGATTGTTCAAATTGTTCTGAAACAGCTCAGGTCAATGCAAAGCTGGCAGCTGCTGAGGAGGCCCTATCATTATCAGTATGGACAATGGCAACTACATGTCGAGTCCTGTCCCTTGATAGTGTGCTGACATTAATTACAGGAGTGTTGCTGGAAAAACAGGTGGTAATAGTATGCCCAAATCTGGGTGTTCTATCTTCCACAGTTCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCGGTTTTACCGGGTAGAATGATTGATTTTCTTGATGCCCCAGTTCCATATATTGTTGGCATACAACATAAACCAGATGACATGAATATGAAAACTACTAATCTTGTTCTTGTTAATGTACAGAAGGATCAGGTTACAATGTGTCACTTACCGAAACTTCCACAGCATAAAGTGCTTGTCTCTCAGTTGACTCCAATTCATGCTAAACTTTCAAAGGAAAGATCAATTGCTACAAAGCATCCTGTACATAGGTGCAACGAAGTCCAGGCTGAAGCTGCAACCAAGTTTTTGAATATAATATGGCACTATTTGGAGTCACTTTGTTCGGATCTGAAATCTCACACGATAACTAGTGTACAAGGAAATAACGACAGGGTTTCTTTACTTCTTAAAGATAGCTTCATTGATTCCTTTCCTGCTAGGGACCAGCCATTCGTTAAGCTATTTGTAGATACACAGCTCTTCACGGTTTTATCAGACTCTCGTTTGTCAAGCTTTGAGAATGGCGAGTCATAG 2466 0.4148 MDSKEEAEPQEERPSSPMRVLQQLSEGAFRVAGEAFHNMYTGGGSGMSPMGPGSHRRSQSELVTRGYQRTQSLQKLKSHVNKAWRWGGKTREECLSSFNPEVMANQKRQWYQLHPKTLECVNYKEPTSLFEHFVIVGLHPDANLEAVEHSFAGRKKWEKEKEKLEFLDYKVLEQQRSPEPILEPQLLFKYPPAKKLTMRMTDLSSFCFPEGVKARLLERTPSLSELNELVYGQEHLGKDDHSFVFTVKATDNTTLYGVCLHVPEIVQRPPGILGIPSSFSHPSGGCSRFLVSAPRCYCLLTRVPFFELHFEMLNSLIAQERLNRITQFINEMTLTSCIPSTAKLDDQRSSNAYSPDRESFSDWMNCAIPVDGAAVISAAAAGIISDDEMLQLSPKIWDSRCQSPVSVTASDTSDYFQYRDIDKDGRKNLQDQDNCAFETLETHDSMERMHGNCENDQVSPKVGTPLSARSNVLDHLGSSESLFSPVRSMASEDEDYVFANSERDYGNKLLMEQATENQNDLLQIVCRYHDQPIPPRGSEFVFHPLEHLQPIQYIRHSASSLGLNDDCSNCSETAQVNAKLAAAEEALSLSVWTMATTCRVLSLDSVLTLITGVLLEKQVVIVCPNLGVLSSTVLSLIPMIRPFQWQSLLLPVLPGRMIDFLDAPVPYIVGIQHKPDDMNMKTTNLVLVNVQKDQVTMCHLPKLPQHKVLVSQLTPIHAKLSKERSIATKHPVHRCNEVQAEAATKFLNIIWHYLESLCSDLKSHTITSVQGNNDRVSLLLKDSFIDSFPARDQPFVKLFVDTQLFTVLSDSRLSSFENGES 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02263 821 ProSiteProfiles Tripartite DENN domain profile. 165 819 IPR037516 -
Cca03g02263 821 PANTHER BNAA09G10210D PROTEIN 25 818 - -
Cca03g02263 821 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g02263 821 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 25 818 - -
Cca03g02263 821 Pfam uDENN domain 184 262 IPR005113 -
Cca03g02263 821 SMART uDENN_cls 126 263 IPR005113 -
Cca03g02263 821 Gene3D - 590 755 IPR043153 -
Cca03g02263 821 Pfam DENN (AEX-3) domain 592 692 IPR001194 -
Cca03g02263 821 Gene3D - 118 341 - -
Cca03g02263 821 SMART DENN_cls 292 693 IPR001194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02263 Cca-Chr3 43505580 43513614 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02263 - - gmx:100814487 1387.47