Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02256 ATGGAGGAGGAGGGTGACATATACGACGGTGCTCGAGCTCAGTTCCCTCTTTCATTCGGGAAGCAATCGAAGCCTCAAACCCCTCTCGAAGCCATCCACAATGCCACACGTCGTTCCAATCCCAATCCCAAACCCACCCAACAACTTCCCTCTCTCTCCTCCTCTTCCAAAGAATGGCTCAATTCCCTCCGTCCTCCCAAAAACCCTACTCCTCCACCTCACGACGATGCCCCCACGGTGGGCCCTCCGCCTCCGCCGCCCGCACCTTCCGACGACGACGACGGAGAGATGATTGGCCCGCCCCCGCCGCCACCGAATGCGTCGGAGTCCGAAGAGGATTCGGATCAGGACGAGGTAGGGACGCACTTCAGGATTCCCCTTAGCAACGAGATTGTACTAAAGGGCCACACCAAGGTTGTATCAGCTCTTGCTGTGGATCACACTGGATCGAGAGTGCTTTCTGGAAGCTATGACTATATGGTAAGAATGTACGACTTTCAAGGGATGAATGCTCGTCTGCAATCATTTCGACAGCTGGAGCCGTTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGCGTGACTGGGTCAGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAGGATGGCTCACTACGTATATGGGATGTCAATGACTTCAAAAGTCAAAAACAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCCGGTGGTATAGGAGATGGTTCAATACAGATTTGGAATATTAAGCCCGGATGGGGGAGTAGGCCAGATGTACATATTGAAAAATGTCATGAGGATGATATTAGTGGTCTGAAATTTTCTAGTGATGGGAGAATCTTACTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTGCGCAAAATAAAGGAACCGTTAAAGGTGTTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAACAACTCTTTTTGACTGGAACATCCGTGGAAAGGGAGAGCTCGACTGGAGGTTTATTATGCTTCTTTGATAGAGTAAACCTTGAGCTTGTTTCTAGAGTTGGCATATCACCCACTTGTAGTGTTGTCCAGTGTTATTGGCATCCTAAACTAAATCAGATATTTGCAACTACTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGACCCAACCGTAAGTGAGAGAGGAGCTTTGGTCTGTGTTGCACGTGCACCGAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCTTTACCATTATTTAGAGATCAGCCAAGCCGGAAGCGTCAGCGAGAGAAAATATTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCTATTACTGGTCCTGGCTTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGTGGTATGATCAAGGAGACATGGATGGAGGAGGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCGAAGTCAGATTCCGAGGATGAAGAGAAATGA 1815 0.4667 MEEEGDIYDGARAQFPLSFGKQSKPQTPLEAIHNATRRSNPNPKPTQQLPSLSSSSKEWLNSLRPPKNPTPPPHDDAPTVGPPPPPPAPSDDDDGEMIGPPPPPPNASESEEDSDQDEVGTHFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVRMYDFQGMNARLQSFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDVHIEKCHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSTGGLLCFFDRVNLELVSRVGISPTCSVVQCYWHPKLNQIFATTGDKSQGGTHILYDPTVSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02256 604 MobiDBLite consensus disorder prediction 583 604 - -
Cca03g02256 604 ProSitePatterns Trp-Asp (WD) repeats signature. 302 316 IPR019775 -
Cca03g02256 604 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Cca03g02256 604 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Cca03g02256 604 PRINTS G protein beta WD-40 repeat signature 348 362 IPR020472 -
Cca03g02256 604 Gene3D - 101 221 IPR015943 GO:0005515
Cca03g02256 604 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Cca03g02256 604 Pfam WD domain, G-beta repeat 327 361 IPR001680 GO:0005515
Cca03g02256 604 Pfam WD domain, G-beta repeat 131 165 IPR001680 GO:0005515
Cca03g02256 604 Pfam WD domain, G-beta repeat 232 267 IPR001680 GO:0005515
Cca03g02256 604 Pfam WD domain, G-beta repeat 289 315 IPR001680 GO:0005515
Cca03g02256 604 MobiDBLite consensus disorder prediction 1 119 - -
Cca03g02256 604 MobiDBLite consensus disorder prediction 503 535 - -
Cca03g02256 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 363 IPR001680 GO:0005515
Cca03g02256 604 CDD WD40 132 451 - -
Cca03g02256 604 Gene3D - 222 462 IPR015943 GO:0005515
Cca03g02256 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 269 - -
Cca03g02256 604 MobiDBLite consensus disorder prediction 503 521 - -
Cca03g02256 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 363 - -
Cca03g02256 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 167 - -
Cca03g02256 604 SUPERFAMILY WD40 repeat-like 115 450 IPR036322 GO:0005515
Cca03g02256 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Cca03g02256 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 276 IPR001680 GO:0005515
Cca03g02256 604 MobiDBLite consensus disorder prediction 65 108 - -
Cca03g02256 604 MobiDBLite consensus disorder prediction 19 63 - -
Cca03g02256 604 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 604 - -
Cca03g02256 604 SMART WD40_4 126 165 IPR001680 GO:0005515
Cca03g02256 604 SMART WD40_4 322 361 IPR001680 GO:0005515
Cca03g02256 604 SMART WD40_4 271 315 IPR001680 GO:0005515
Cca03g02256 604 SMART WD40_4 175 212 IPR001680 GO:0005515
Cca03g02256 604 SMART WD40_4 224 267 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02256 236 434 Miscellaneous Gene Families AT5G08390 24.500 2.14e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02256 K24752 - gmx:100815380 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02256 03 43475696 43480146 Cca03g02256 03 43475696 43480146 ECH