Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02255 ATGGAAGAAAGTAGGTTGATGCCCATGGACGCTGAGCAACTGCGTGACCACGCTCATAAGATGGTCGACTTCATCGCTGATTACTACAAAACCATCCAAACTTTCCCCGTTCTCAGCCAAGTCCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCAAATTATCCTGATTCATTGCAAAATGTTTTGAATGATGTACAGGAAAAAATACTCCCAGGGGTCACACATTGGCAAAGCCCCAATTATTTTGCTTATTTTCCTTCCAATAGTAGCATTGCTGGATTTCTAGGAGAGATGCTCAGCGCGGGTCTTAACATTGTGGGTTTCAGTTGGATAACTTCTCCTGCCGCAACTGAACTTGAAACCATTGTGCTGGACTGGCTTGCAAAGGCGCTCCAGCTGCCTGATGATTTCTATTCTAGTGGGCAAGGTGGTGGAGTTATACAGGGGACAGCAAGTGAAGCTGTACTTGTTGTCTTAGTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAGTGCCCTTCCAAAGCTTGTGATGTATGCATCTGATCAAACACATTCTGCTTTACAAAAAGCTTGTCAGATAGCAGGACTTAATCCAGAGCTTTGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTACTTTCTGAAGCAATTTCAAGTGATATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTATTGATCCTTTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCACGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTTTGTCCAGAGTACCGCCATTGCATTGATGGTGTTGAAGAAGCGGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAATTTTGACTGTTCAGTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCACTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTTATAGATTACAAAGATTGGCAAATACCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTTTATGGATTGGAAGGTCTGCGAAGTCACATAAGAAACCACATTGAGATGGCTGCTTATTTTGAGGAGCTTGTTGGTCAGGACACAAGATTCAAGGTCATTGCACCCCGGACATTCTCCTTAGTTTGCTTTCGGCTGTTGCCCCTTCTAAATTCTGAAGATCATGGCAATAAACTCAATTCTGATCTACTCGACTCAGTAAATTCAACAGGAAATGCCTTCATAACACACACGGTTTTATCAGGTGAGTACGTTCTTCGTTTCGCAGTAGGAGCACCATTGACAGAAAGGAAGCATGTAGATATGGCGTGGCAGATTTTGCAAGACAAAGCCACTGCACTACTTGAGAGTTCATAG 1467 0.4315 MEESRLMPMDAEQLRDHAHKMVDFIADYYKTIQTFPVLSQVQPGYLGKLLPDSAPNYPDSLQNVLNDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKALQLPDDFYSSGQGGGVIQGTASEAVLVVLVAARDKILRRVGRSALPKLVMYASDQTHSALQKACQIAGLNPELCRLLKTDSSTNYALSPDVLSEAISSDIAGGLVPFFLCATVGTTSSTAIDPLPALGKIAKTNKLWFHVDAAYAGSACVCPEYRHCIDGVEEADSFNMNAHKWFLTNFDCSVLWVKDRSSLIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHIRNHIEMAAYFEELVGQDTRFKVIAPRTFSLVCFRLLPLLNSEDHGNKLNSDLLDSVNSTGNAFITHTVLSGEYVLRFAVGAPLTERKHVDMAWQILQDKATALLESS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02255 488 Gene3D - 5 89 - -
Cca03g02255 488 PANTHER BNAA07G00240D PROTEIN 9 487 - -
Cca03g02255 488 CDD DOPA_deC_like 84 479 - -
Cca03g02255 488 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 299 320 IPR021115 GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 14 33 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 37 54 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 55 74 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 81 100 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 102 120 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 121 140 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 146 166 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 355 370 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PRINTS Aromatic-L-amino-acid decarboxylase signature 398 417 IPR010977 GO:0006520|GO:0016831
Cca03g02255 488 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 9 487 - -
Cca03g02255 488 SUPERFAMILY PLP-dependent transferases 9 481 IPR015424 -
Cca03g02255 488 Pfam Pyridoxal-dependent decarboxylase conserved domain 43 416 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca03g02255 488 Gene3D Aspartate Aminotransferase, domain 1 383 488 IPR015422 GO:0003824
Cca03g02255 488 Gene3D - 90 382 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02255 Cca-Chr3 43408063 43415068 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02255 K01593 - gmx:100791074 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02255 03 43408063 43415068 Cca03g02255 03 43408063 43415068 ECH