Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02249 ATGATGCTAAGAAGCTCTTCAACACCAGTTCTTGGCTCCCTCCTCTCTTCCTTTACAGATAGTCCAAATAACAATATTCACTCAGAAACTTGTCATGGGCTTAAACATTTTCCACCTACCAGTGTCCCTCAACATTATCACAAACTGTCTTTGCATCAAACTGGGTCCTTTTCTTTCTCTACCTTCTCATGTGGTTCTTCTCCAATCTCTCCCTCAATTGGTGAGCTTGAAAGGCAAAACAAAGGGTTTAGAAGAGTCCAATCTGATGGGAACTTGCAAGACTTGGTCTACTCTTCTTGCAATAATGAAGACAGGTTGGAGTATTCAGACCCTCCCAAGAGGTTTTCAGGGAGACATAGGAGCTTGGTGCTGGAGACCATTCCTTCTTTCTCAACTAAGCGCAATGGTTTGCGTgaagaagaggaagatgaagagacggagagtgagagtgaagatgGTTTCAGTGTGGTGAAGGGTGTGATATTGAGTGAAGAGGTGGGAGTGAAGGATGGGGTTTGCAGGGTGAGTTTTGGTGACAAGGAAGAGGCTGGTGGTGATAAAGAAATGTATCTTGCAAAGGGGCTTGGGGTAGAGTGTTGTGGTGATGGCATAGGAGGGTGCAGAGGTGGTGGTGGAAGTGGTGATCATAATCCTATGGGTTCTGGAGGAAATGATGGAGATAGGCATGGGGTGGAAGAATATTACAAGAAAATGGTGAAGGAAAATCCTGGGAATCCCTTGTTTCTCAGGAATTATGCAAATTTTCTGTATCAGTGCAAACAAGACCGTGAAGGAGCAGAGGAGTATTATTCCCGTGCCATACTAGCAGACCCAAATGATGGAGATGTTCTATCACAATATGGGAAGCTAGTTTGGGAGCTACACCATGACCAAGAACGTGCCTCCACCTATTTTGAAAGAGCAGTGCAAGTCTCTCCTGAAGACAGCCATGTACATGCTGCGTATGCTAGTTTCCTTTGGGACACAGAGGAAGATGAGGATGGAAGCAATGAACCACAATGTTTTCCGCCTCATTCTCATCAAGGAGCTATGGCTACTGCAGGTGCTTGA 1071 0.4342 MMLRSSSTPVLGSLLSSFTDSPNNNIHSETCHGLKHFPPTSVPQHYHKLSLHQTGSFSFSTFSCGSSPISPSIGELERQNKGFRRVQSDGNLQDLVYSSCNNEDRLEYSDPPKRFSGRHRSLVLETIPSFSTKRNGLREEEEDEETESESEDGFSVVKGVILSEEVGVKDGVCRVSFGDKEEAGGDKEMYLAKGLGVECCGDGIGGCRGGGGSGDHNPMGSGGNDGDRHGVEEYYKKMVKENPGNPLFLRNYANFLYQCKQDREGAEEYYSRAILADPNDGDVLSQYGKLVWELHHDQERASTYFERAVQVSPEDSHVHAAYASFLWDTEEDEDGSNEPQCFPPHSHQGAMATAGA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02249 356 MobiDBLite consensus disorder prediction 329 356 - -
Cca03g02249 356 MobiDBLite consensus disorder prediction 131 153 - -
Cca03g02249 356 SUPERFAMILY TPR-like 232 334 IPR011990 GO:0005515
Cca03g02249 356 SMART hat_new_1 296 328 IPR003107 GO:0006396
Cca03g02249 356 SMART hat_new_1 226 258 IPR003107 GO:0006396
Cca03g02249 356 SMART hat_new_1 261 293 IPR003107 GO:0006396
Cca03g02249 356 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 341 - -
Cca03g02249 356 Gene3D Tetratricopeptide repeat domain 177 334 IPR011990 GO:0005515
Cca03g02249 356 PANTHER OSJNBA0004N05.2 PROTEIN 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02249 Cca-Chr3 43339064 43341997 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02249 - - gmx:100788436 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02249 03 43339064 43341997 Cca03g02249 03 43339064 43341997 ECH