Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02248 ATGGCGTCTTCCTATTCCGCTTCCGTCAGTGCCGCCCAGGTTGGTTCCTACTTCGTTGGACAGTACTACCAGGTCCTCCGCCAGCAGCCCAATCTCGTTCACCAGTTCTACTCTGATTCCAGCAGCATGATTCGCGTTGACGGAGATTCCGTTGAATCTGCGCACGATGTGGTGCAAATTCATTCAATCGTCTCTTTACTGAATTTCACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATTAGTGGGAGGCGGAAGTTTGTTCAAACCTTCTTTCTCGCTCCCCAAGAGAAGGGTTACTTCGTACTCAATGATATGTTCCATTTCATTGATGATGGAGTAACTTACCCAAATATGGTACCCGTGGCATCAGAAACGATCGACGCACAACCACATGTATCTGCTTCTCTTGCAGAACCACCAGCTTCAGACTATGGTTTGGAGGAAGAAGCTAGAGAATATGTCAACTCAGTTCACATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTAAAAGAAGATCTTGAAACTGAAATTGTTGTGGAGGAAACACCTGCACAGGAGGCATCTCCACCAATTCATAACGTTGCACACACTGTCCAAGAACCCCCTGTTGCTTTTGTGGAAGAGTCTTTGGAGGAGCTTCCTAAGAAAACTTATGCATCCATTTTACGAGTTGCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACAGCATGTTCCACAACAAGCTTTCAAAAGTGCTCCACCTCCTTCAGAGTTGAACCATGTAACACAGCCTGCTGTTCAGCAGTCAAGTTCTGCATCTATTTATGTTCCTGAGCCAGTGGCTGAGGGAGTTGAGGAAGGCTATGGACTAGAAGAAGAAGGTGAAGTAACATCTGTCTATGTGAGAAACCTGCCTGCTAATGTTACTGAGGCTGAGATTGACCAGGAATTTAAGAATTTTGGTAGAATCAAGCCGGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGTGTTTGCTATGCCTTTGTGGAATTCGAAGACATTATTGGTGTTCAAAATGCGCTTGAGGCTTCTCCCATACAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGGCAGTGCAGCACGGGGAGCAAGAAGGGGAAGAGGAAGAGGTAATTATCAAACAGATGCTCCAAGAGGGCGTTTTGGTGCTAGGAGCATGGGAAGGGGAGGTAATCAGGATAGTTCAGACTACACCAGACTAAGAGGCGATGGTTATTTTCAGCGTGGTTCACGATGA 1359 0.4614 MASSYSASVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMIRVDGDSVESAHDVVQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDISGRRKFVQTFFLAPQEKGYFVLNDMFHFIDDGVTYPNMVPVASETIDAQPHVSASLAEPPASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLKEDLETEIVVEETPAQEASPPIHNVAHTVQEPPVAFVEESLEELPKKTYASILRVAKGQPVLSAAPQHVPQQAFKSAPPPSELNHVTQPAVQQSSSASIYVPEPVAEGVEEGYGLEEEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALEASPIQLAGRQVYIEERRPNSGSAARGARRGRGRGNYQTDAPRGRFGARSMGRGGNQDSSDYTRLRGDGYFQRGSR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02248 452 MobiDBLite consensus disorder prediction 394 452 - -
Cca03g02248 452 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Cca03g02248 452 Gene3D - 3 132 - -
Cca03g02248 452 Gene3D - 307 446 IPR012677 -
Cca03g02248 452 CDD RRM_SF 320 391 - -
Cca03g02248 452 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Cca03g02248 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 446 IPR039539 -
Cca03g02248 452 SUPERFAMILY RNA-binding domain, RBD 315 423 IPR035979 GO:0003676
Cca03g02248 452 SMART rrm1_1 319 391 IPR000504 GO:0003723
Cca03g02248 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Cca03g02248 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Cca03g02248 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 382 IPR000504 GO:0003723
Cca03g02248 452 CDD NTF2 13 130 IPR018222 -
Cca03g02248 452 PANTHER GB|AAD20086.1 9 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02248 Cca-Chr3 43331233 43338275 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02248 - - gmx:100787900 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02248 03 43331233 43338275 Cca03g02248 03 43331233 43338275 ECH