Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02247 ATGACGCCACTTGTCGCGCACCTCACGTTTGCATTGCCCTACTTCGCAATTTCCAATTCTCGATTTACCACCAAAAACTGCCACTCCAGGTTTCAATTTCGTCTCCACAACGAAGAAAGCCCCATTCTCTTCTCTTCCACAAAACCGTTTCTCTCCCGCGAGGTAAAGAGCTTCTATTCAGGCATGGGCGATAGTGAATTAGTGGCTACCGGAGCATCTGCTGCTGAGGCATATGCTTCGGCTGGTTATGCTGAGGCTGGTTCGAATCCTGTTCCTGAGGCAGGTGCTGCCGTTGATCAATCTGCTGGAGAAGCTGCACAAGGCGCTTCAGCTTATGGATTTGGTTATTCTAATGCTGGTGATGCAAATGCATACGCCGGGGATCCAAATTCTGTTCTACAACAAGCGCAATTCAATGCAACTGGTGATTCCAAGCAACCTGACGGAGTGACCGATGCTAATGAGGCCTCCACTGGGCTTGGAAGCACACCTGCTGAGTCTGCTGTGGTTTCCGACTTCAATTCATCTGTAAATGGCGGTGTTGTTGGTGCAGTGGCAAATGCTTCCGAACTTGAAAACGGGACTCCCTTGGAGACTGTTGATGGGGCAGCTGATGAGAAACAATTGGCAGATGGCTACGCAGCTGCCTTATCTGCTGAAGAAGATCGATTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTCACCGCTTGGACTGCCTTGATTGAAGAGACAGAGAAGGTAGCAGAGGACAATATTTTGAAGATTCGAAGAGTATATGATGCTTTTCTAGCAGAATTTCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCTCGTCTTGGTGATAAAGTTGTTGAAGTGTATGAACGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACTTATGGGGATCCAGACACTGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGGACAGATTATCTATCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAAGACTGGGCTCGCCTTGCCATGATCTACACCAGAATATTGGAGAATCCAAATCAGCAATTAGATCGGTATTTTAGCAGCTTCAAAGAATTAGCTGGAAATCGACCTTTGTCAGAATTACGAACTGCTGATGAAGCTGCTGCAGTGACAGGTGTTGCTTCAGAGGCTACTGGCCAAACTATTGAGGGGGAGGTTCATCCTGATGGTGCAGAGCGTTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGGCCCCTCAATGTCGGAGAGCTTGAGAATTGGCATAACTATCTGGACTTTATAGAAAGGGAAGGTGACCTTAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCATGTGCCAATTATCCCGAGTATTGGATACGCTATGTTTTATGCACGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGAGCAACCCAAGTCTTTGTTAAGAGACAACCAGAGATACATCTTTTTTGTGCTCGGTTCAAGGAGCAGAACGGAGATATAGCTGGTGCTAGAGCTGCATATCAACTTGTGCATTCTGAAACCTCCCCTGGTCTTCTTGAAGCAATTATCAGGCATGCAAATATGGAGCACCGACTGGGAAAATTGGAGGATGCCTTCTCATTGTATGAACAGGCCATTGCTATTGAAAAGGGGAAAGAACATTCACAGACATTGCCAATGTTATTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCTGGGAATGCAGAAAGGGCAAGACAGATTCTAGTTGACGGGCTTGAAAATGTTTTGTTGTCAAAGCCACTACTTGAGGCTTTATTGCATTTTGAGGCTATGCAACCCTTGCCAAAGCGAGTTGATATTGACTTTCTGGAGTCATGTGTTGTCAAATTTATAATGCCTAACTCAGAGAGCCCTGGTGTAGCAAGTGCAACTGATCGTGAGGAACTTTCTAGTATTTTTCTGGAGTTTTTAAATCTCTTTGGAGATGTTCAATCTATCAAGAGGGCTGAGGATAGACATGCCAAATTATTTTTGCCACACAGAAGCATGTCAGAGTTGAAAAAACGTCATGCTGAGGATTTCTTAGCTTCAGACAAAACAAAAGTGCCTAGAACTTATTCTGTTCAATCACCTGCCCAATCTGTGATGGGTACATATCCAAATGCGCAGAACCAATGGACTAATTATGGAGTACAACCTCAAACTTGGCCTCCAGTTACACAAGCACAAGGACAACAATGGACTGCTGGCTACACCCCGCAGGCTTCCTACGGTGCTTACGCTGGATATGCGGGTAACTATGCAAATTCTCAACTACCTACATCAGTTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGCCGGCAGTACCTCAACAAAATTATGCACAACCTGTTGCAGCCCCTGCACAGCAACCTGCTGCGGTTCCTCAAGCTTATTACGGCAGTTATTACTGA 2664 0.4456 MTPLVAHLTFALPYFAISNSRFTTKNCHSRFQFRLHNEESPILFSSTKPFLSREVKSFYSGMGDSELVATGASAAEAYASAGYAEAGSNPVPEAGAAVDQSAGEAAQGASAYGFGYSNAGDANAYAGDPNSVLQQAQFNATGDSKQPDGVTDANEASTGLGSTPAESAVVSDFNSSVNGGVVGAVANASELENGTPLETVDGAADEKQLADGYAAALSAEEDRLWNIVRANSLDFTAWTALIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTADEAAAVTGVASEATGQTIEGEVHPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCTEASGSMDLANNVLARATQVFVKRQPEIHLFCARFKEQNGDIAGARAAYQLVHSETSPGLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAERARQILVDGLENVLLSKPLLEALLHFEAMQPLPKRVDIDFLESCVVKFIMPNSESPGVASATDREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKVPRTYSVQSPAQSVMGTYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTPQASYGAYAGYAGNYANSQLPTSVPQSTAYGAYPPAYPAQPAVPQQNYAQPVAAPAQQPAAVPQAYYGSYY 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02247 887 PANTHER PRE-MRNA-PROCESSING FACTOR 39 165 873 - -
Cca03g02247 887 SUPERFAMILY TPR-like 442 745 IPR011990 GO:0005515
Cca03g02247 887 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 165 873 - -
Cca03g02247 887 SUPERFAMILY TPR-like 228 386 IPR011990 GO:0005515
Cca03g02247 887 Gene3D Tetratricopeptide repeat domain 478 781 IPR011990 GO:0005515
Cca03g02247 887 MobiDBLite consensus disorder prediction 140 165 - -
Cca03g02247 887 Gene3D Tetratricopeptide repeat domain 226 390 IPR011990 GO:0005515
Cca03g02247 887 SMART hat_new_1 251 283 IPR003107 GO:0006396
Cca03g02247 887 SMART hat_new_1 643 675 IPR003107 GO:0006396
Cca03g02247 887 SMART hat_new_1 498 530 IPR003107 GO:0006396
Cca03g02247 887 SMART hat_new_1 602 637 IPR003107 GO:0006396
Cca03g02247 887 SMART hat_new_1 318 353 IPR003107 GO:0006396
Cca03g02247 887 SMART hat_new_1 286 315 IPR003107 GO:0006396
Cca03g02247 887 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02247 Cca-Chr3 43316843 43326373 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02247 K13217 - gmx:100787373 1397.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02247 03 43316843 43326373 Cca03g02247 03 43316843 43326373 ECH