Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02243 ATGGCAAAGTTTCTGGCACTCTCACTAATCATATCAAGCCTCTTCATTGGCCTAGTGAGTGCAGAATGGAACATATTGAACCAAAGATGGGGAAAAAGAAAAGGGATAGTTGAAGAGAACTTGAAGAACTACTGTGAGAGTTGGAGGATAAATGTTGAACTAAACAACATTAGGGGGTTCAGTGTTGTGCCTCAAGAATGTGTGGAGCACGTGAAGAAATACATGACTTCATCTCAGTACAAGGCTGACTCTGTGAGGGCAGTGGAGGAGGTTAGGCTCTATTTGAGTGGATGCTGCACTTTCAAAGGTGATGGCAAAGATTCCTGGATTTTTGATATTGATGACACCCTTTTGTCCACAATTCCTTATTATAAGAAACATGGTTTTGGGGGAGAAAAGGTGAACGCAAGCTCTTTAGAAGCATGGATGATGAGAAGCAAGGCACCTGCTCTAGATCACACACTTGAACTCTTCCATGAAATCAAGAACAGAGGGATCAATATCTTTCTCATTTCTTCAAGAAAGGAAAACCTTAGATCTTCCACCGTAGACAACCTTGTGAATGTTGGGTACCATGGATGGACTAGTCTTACATTGAGGGGTTTTGAAGATGAATTGGTGGAAGTGAAAAACTACCATTCCAAGGTGAGGCAACAATTGGTCGATGAAGGTTATCGTATTTGGGGTATTATTGGAGATCAATGGAGCAGCTTTGATGGGCTTCCAATGGCAAAGAGGACATTCAAACTACCCAATTCCATTTACTATATACCATAA 777 0.4131 MAKFLALSLIISSLFIGLVSAEWNILNQRWGKRKGIVEENLKNYCESWRINVELNNIRGFSVVPQECVEHVKKYMTSSQYKADSVRAVEEVRLYLSGCCTFKGDGKDSWIFDIDDTLLSTIPYYKKHGFGGEKVNASSLEAWMMRSKAPALDHTLELFHEIKNRGINIFLISSRKENLRSSTVDNLVNVGYHGWTSLTLRGFEDELVEVKNYHSKVRQQLVDEGYRIWGIIGDQWSSFDGLPMAKRTFKLPNSIYYIP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02243 258 TIGRFAM plant-AP: plant acid phosphatase 39 258 IPR010028 GO:0003993
Cca03g02243 258 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 42 257 IPR005519 -
Cca03g02243 258 SUPERFAMILY HAD-like 100 244 IPR036412 -
Cca03g02243 258 Gene3D - 41 258 IPR023214 -
Cca03g02243 258 PANTHER ACID PHOSPHATASE 1 1 257 - -
Cca03g02243 258 CDD HAD_VSP 71 257 - -
Cca03g02243 258 PIRSF VSP 1 258 IPR014403 -
Cca03g02243 258 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02243 Cca-Chr3 43271702 43276914 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02243 - - gmx:100811100 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02243 03 43271702 43276914 Cca03g02243 03 43271702 43276914 ECH