Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02234 ATGGATGGTTCTGGAAAGTCCACCGTTAGTAAAACCAAACTACTGAATCCATGGATGCTCCACTTCCAGAAACTCGCTCTCGAGCTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGCGGCCGGTGTTACTTCCATGCAATCACTTGTTCTGCGATTCCTGCTTGGCTGATTGTATAACGGCTGGTTCTGAATGCGCTGTTTGTAATGCAAAGTATACTCAAACAGATGTAAGGCACGTGCCTTTTGTGGAAAACGTGGTGGCTATTTACAGAAGCTTGGATGCCACCTTCTGTGCTAGTCTGTTTCAGCAACGCTCTACTGGTGACGCGGGGGTTTTGGAGCCGTGCCAAGAATTACTCAATTCAACTTCTAGTAGCATGAAAGCTGCCAAGCTTCCTCGGAATTTGCCTAATTATAGTGGGGTCGGGGCTGGCAAGAGTCAGAAATCCAGGATTCTGGTGCATGATAAAGCTGAGGAGCTTGAATTGTCTTGTGGGAGAGGGAAGCTCGCTCCAATGCAATCTTCCCATATGGAACTTGTGGTTCGTGGAGATTGTGCTGTTGTGGAGATGGATGTGAATCAAGTGACACAATCAGCACCGGATAGCCCTCCTTTTTGTGATACTAAAGGTTCAGATAATGACTGCAGTGATCAAGATAGTGGGCACCCATTACCTTCTGATAGATTGGAAAATTCTTCATTAAAGAGGGCTAGTGCAGGAAATGTAAATCTGAAGGGAAGAATGGGACAGTTAAGATCTGAAAGTTCAGCCTCTGAAACAGAGGGTCTTGCAAGGGATCTCAAGAGACAAAAAGTTCTGGACCTTAAATCTGGAAAGGACCCTGGTGCATCACTGCCCACAAGTGCTTCAAATGACGTATGTCCAACTGGAAGTATCTGTTCATTCTGCCAGTCCTCTAGAATCTCAGAGGCTACTGGGCCAATGCTGCATTATGCAAATGGGAACTTAGTTACAGGAGATGCAGCAATGCAATCAAATGTCATACCTGTGCATAGAAGTTGCATTGACTGGGCACCCCAGGTGTACTTTGTTGATGAAGTAGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCTTGTAGAAGGACTTATCATGTTCCTTGTGCAATGGACATCTCAACTTGCCGATGGGATAATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAACCAGATCTAAGAAGCAGGCAATTCAGAAGCACCCCACTCTGCCTCATCTGCCATCTCACCACTCAAATCCTCTTGAAGCTTCACAGGATGATAGTAAAAAATTGGTTTTTTGTGGGTCTGCTCTATCAAATGAAGACAAGGTACTTTTGATCAATTATGCAAGCAAAATTGGTGCTACTGTGACCAAGTTCTGGACATCAAATGTCACTCACGTAATTGCATCAACTGATGGAAATGGAGCATGCTCTAGGACATTAAAAGTTCTCATGGCAATTCTAAATGGACGATGGGTTCTAAAAGTGGATTGGATAAAAGTATGCATAGAAGAGATAAATCCTGTAGAGGAAGAACCATTTGAAATTAATCTTGACAACCAAGGGTGTCAAGGTGGTCCAAAATCTGGCAGACTTCGGGCATTGGCCAATGAGCCAAAGCTATTCAGCGATTTGAAGTTTTATTTTTCTGGGGATTATGTGCCAGCTTATAAGGAAGATCTTGAAGATTTAATTGAAGTGGGGGGAGGTACTGTTTTGAGAAGCAAGGAAGAACTGGAAGCACAAAGACATAAATGTGAAGTGGATTCTTCAAAGCTGCTGATTGTTTACAACCTGGATCCACCACAAGGATGCAAGTTGGGGGATGAAGTTTCAATTCTTTGGCAAAGGCTAAACGAGGCAGAGGATTTAGCTGCCAATACTCTACAAGTCATTGGTCACACGTGGATTCTTGAATCAATTGCTGCATGTAAACTGCAGCCTTTCGTAAACTAA 2049 0.4339 MDGSGKSTVSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCDSCLADCITAGSECAVCNAKYTQTDVRHVPFVENVVAIYRSLDATFCASLFQQRSTGDAGVLEPCQELLNSTSSSMKAAKLPRNLPNYSGVGAGKSQKSRILVHDKAEELELSCGRGKLAPMQSSHMELVVRGDCAVVEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSGHPLPSDRLENSSLKRASAGNVNLKGRMGQLRSESSASETEGLARDLKRQKVLDLKSGKDPGASLPTSASNDVCPTGSICSFCQSSRISEATGPMLHYANGNLVTGDAAMQSNVIPVHRSCIDWAPQVYFVDEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDNEDFLLLCPVHSNVKFPCEKTRSKKQAIQKHPTLPHLPSHHSNPLEASQDDSKKLVFCGSALSNEDKVLLINYASKIGATVTKFWTSNVTHVIASTDGNGACSRTLKVLMAILNGRWVLKVDWIKVCIEEINPVEEEPFEINLDNQGCQGGPKSGRLRALANEPKLFSDLKFYFSGDYVPAYKEDLEDLIEVGGGTVLRSKEELEAQRHKCEVDSSKLLIVYNLDPPQGCKLGDEVSILWQRLNEAEDLAANTLQVIGHTWILESIAACKLQPFVN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02234 682 Gene3D BRCT domain 457 563 IPR036420 -
Cca03g02234 682 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 12 680 - -
Cca03g02234 682 Pfam Zinc finger, C3HC4 type (RING finger) 28 74 - -
Cca03g02234 682 MobiDBLite consensus disorder prediction 226 240 - -
Cca03g02234 682 CDD RING-HC 31 68 - -
Cca03g02234 682 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 12 680 IPR031099 GO:0006281|GO:0006974
Cca03g02234 682 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Cca03g02234 682 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Cca03g02234 682 CDD BRCT_Bard1_rpt1 461 536 - -
Cca03g02234 682 Pfam BRCA1 C Terminus (BRCT) domain 462 534 IPR001357 -
Cca03g02234 682 SUPERFAMILY BRCT domain 461 548 IPR036420 -
Cca03g02234 682 SMART BRCT_7 448 537 IPR001357 -
Cca03g02234 682 SMART BRCT_7 570 675 IPR001357 -
Cca03g02234 682 SMART PHD_3 370 418 IPR001965 -
Cca03g02234 682 MobiDBLite consensus disorder prediction 197 292 - -
Cca03g02234 682 SUPERFAMILY BRCT domain 572 680 IPR036420 -
Cca03g02234 682 SMART ring_2 31 68 IPR001841 -
Cca03g02234 682 SMART ring_2 371 417 IPR001841 -
Cca03g02234 682 ProSiteProfiles Extended PHD (ePHD) domain profile. 298 418 IPR034732 -
Cca03g02234 682 SUPERFAMILY RING/U-box 28 91 - -
Cca03g02234 682 MobiDBLite consensus disorder prediction 260 277 - -
Cca03g02234 682 Pfam BRCT domain, a BRCA1 C-terminus domain 570 679 IPR001357 -
Cca03g02234 682 Gene3D BRCT domain 570 675 IPR036420 -
Cca03g02234 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 420 IPR013083 -
Cca03g02234 682 ProSiteProfiles BRCT domain profile. 461 547 IPR001357 -
Cca03g02234 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 100 IPR013083 -
Cca03g02234 682 ProSiteProfiles BRCT domain profile. 568 682 IPR001357 -
Cca03g02234 682 Pfam PHD-like zinc-binding domain 339 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02234 Cca-Chr3 43187726 43192678 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02234 K10683 - gmx:100784883 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02234 03 43187726 43192678 Cca03g02234 03 43187726 43192678 ECH