Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02232 ATGTGCCACTCACTGTTACTGTTACTGCTCTTTCTCACTCTTCTTTTCCTTCTCTTTGAATATCGTGCCAAAATTTCCAAACACAGATATCATAATAACGGAAGAGCTTCTATTTTTTGTGATTGgagagagagagacagaaagatggagagtgggaatgggaagagagCACAGGAAGAAGCAGGCCCTTCATCTGGGATTGATGAAAGCAAACAGGAAGTGACTGGAAAAGCAAGTGATGTTTATGATCACGCTAGagaagaggaggaagaagcagaggaagaggaagaaggagCCATTCACCATAATAAAAATGCTGTCTTTGTTCCTGGGCCTCTTCTTTCTCTCAAGGAACAGATCGAACGAGACAAGGAGGACGAAAGCCTAAGGAGGTGGAAGGAGAAGCTGTTGGGTTGCTTGGAAAGTGATTTAGATGATAAATTGGATCCTGAAGTGAAATTCCACTCCATAGGAATTCTCTCCGAGGATTTTGGTGAAATTGTTACTCCTTTACCTGTGGATGAAAAACAGAATGGTTGTACCCTATTCACTCTCCGGGAGGGGTCTCGCTATCAGCTTAAGCTAAAATTTAGTGTTCTGCATAACATTGTGTCTGGCTTGACATACTCCAACAGTGTGTGGAAAGGAGGGCTTCAAGTTGATCAGAGCAAAGGAATGTTGGGTACATTTGCTCCTCAAAAGGAGCCATATGTATATGCCTTGAAGGAGGACACCACTCCCTCTGGTGCACTTGCAAGGGGTGTTTACTCGGCCAAACTTAAGTTTGAAGATGATGACAGAAGGTGTCACATGGAACTCAAATATTTATTCGAGATAAAAAAGAGCAGCTAA 852 0.3815 MCHSLLLLLLFLTLLFLLFEYRAKISKHRYHNNGRASIFCDWRERDRKMESGNGKRAQEEAGPSSGIDESKQEVTGKASDVYDHAREEEEEAEEEEEGAIHHNKNAVFVPGPLLSLKEQIERDKEDESLRRWKEKLLGCLESDLDDKLDPEVKFHSIGILSEDFGEIVTPLPVDEKQNGCTLFTLREGSRYQLKLKFSVLHNIVSGLTYSNSVWKGGLQVDQSKGMLGTFAPQKEPYVYALKEDTTPSGALARGVYSAKLKFEDDDRRCHMELKYLFEIKKSS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02232 283 Coils Coil 85 105 - -
Cca03g02232 283 PANTHER RHO GDP-DISSOCIATION INHIBITOR 54 282 IPR000406 GO:0005094|GO:0005737
Cca03g02232 283 PANTHER RHO GDP-DISSOCIATION INHIBITOR 1-LIKE 54 282 - -
Cca03g02232 283 PRINTS RHO protein GDP dissociation inhibitor signature 203 219 IPR000406 GO:0005094|GO:0005737
Cca03g02232 283 PRINTS RHO protein GDP dissociation inhibitor signature 220 235 IPR000406 GO:0005094|GO:0005737
Cca03g02232 283 PRINTS RHO protein GDP dissociation inhibitor signature 262 279 IPR000406 GO:0005094|GO:0005737
Cca03g02232 283 Pfam RHO protein GDP dissociation inhibitor 94 281 IPR000406 GO:0005094|GO:0005737
Cca03g02232 283 SUPERFAMILY E set domains 94 282 IPR014756 -
Cca03g02232 283 MobiDBLite consensus disorder prediction 50 102 - -
Cca03g02232 283 Gene3D Coagulation Factor XIII, subunit A, domain 1 107 283 IPR024792 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02232 Cca-Chr3 43163827 43167027 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02232 K12462 - gmx:100810029 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02232 03 43163827 43167027 Cca03g02232 03 43163827 43167027 ECH