Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02226 ATGAAAAAAGTGAATGGATATTACAAGCGACCCCTTTCTTACCCTCCTGCTGTTGATTTTTCTTCCTCCCATGGCAAGCAACTTTTCTGTGAAGCCATACAGAATGGAACCATGGAAGGTTTCTTCAAGTTGATTTCCTATTTTCAAACACAGTCTGAACCTGCCTTCTGTGGCCTCGCTAGCTTGTCCATGGTTCTCAATGCCCTTGCCATTGACCCTTGTAGGAAATGGAAAGGGCCTTGGAGATGGTTTGATGAATCAATGTTGGATTGTTGTGAACCGCTAGAGACAGTCAAAGTTAAAGGCATCAGCTTTGGGAAACTTGTGTGTTTGGCTCATTGTGCTGGGGCAAAAGTTGAAGCCTTTCGTGCTAGCAGTAGTAGTATTGAAGAATTTCGTAAGTATGTCATTGAGTGTTCACGTTCTACTTCTAAAGATTGTCATGTCATCTCATCATACCACAGAGCTGCTATCAAACAAactggagggggtcacttttctcctatcggaggatatcaccgtgaaaaggacatgacacttattttagatgttgcacgttttaAATATCCTCCTCATTGGGTCTCTCTTGAAGTTCTCTGGGAGGGCATGAATTATGTTGATGACACTACTGGACTAACTAGGGGGTTCATGCTTATATCAAGGCCTCACAGGGAACTTGGCATGCTTTATACTCTGAGTTGCAAACACGAGAGTTGGTTTAAAATTGCAAAGTTCTTAATGGACGATGTTCCAAATCTATTAAAATCAGAGGATATGAAAGATATTCATCATATTTTTTCAAGAATAGTCACATCACTTCCATCTAATTTTGAAGAATTCATCAAATGGGTCGCAGAGATCAGGAGACAAGAGGACGGTGGTCCAAGTATAACTTCAGATGAGAAAACAAGACTTGCTGTAAAGGAAGAGGTATTGAAACAGGTACAGGAGACTGTGCTTTTCAAATATGTGGACTCGTTGTTGGCAAATTCTTGCAATAGACAGATATCAGCTTCGGTTAATGGAAACACGTTACCTGTCATTGCTGCAAGTATTTGTTGCCAAGGAGCAGAAATTTTAGGTGGAAAATCAGACTCATCAACAGGTTATTGGTGTCAAGAGACACATATGAAATGCTTAAAAGCTGAAGATGATAAGCCGATAACAATGGTTCCTGAGACTGTGGTAAATGGTAACTCCGAGCATGGGATTGATGTGTTGATTCCTTCATCATCTGGGAAATTATGCTACAGTTGCTCTAATCCAAGTAAGAACATTAGCATGCACCCTGCTGGCACTGATGTGCTAACAGTGCTTCTACTGTCCTTGCCATCTACAACATGGGACGGCATCACAGATGAGCAACTTTTGGCCAAAATACGTGATCTGGTTCCAATTGATAATCTTCCTACTTTGCTTCAGGAAGAGGTAGTTTTGCAGTTGAGACGGCAGCTACACCTTCTCAAGAGATGTCAAGAAGGTAAGGTGGATAAGGATCTTGGTGCGCCTTTTTCTTAG 1518 0.392 MKKVNGYYKRPLSYPPAVDFSSSHGKQLFCEAIQNGTMEGFFKLISYFQTQSEPAFCGLASLSMVLNALAIDPCRKWKGPWRWFDESMLDCCEPLETVKVKGISFGKLVCLAHCAGAKVEAFRASSSSIEEFRKYVIECSRSTSKDCHVISSYHRAAIKQTGGGHFSPIGGYHREKDMTLILDVARFKYPPHWVSLEVLWEGMNYVDDTTGLTRGFMLISRPHRELGMLYTLSCKHESWFKIAKFLMDDVPNLLKSEDMKDIHHIFSRIVTSLPSNFEEFIKWVAEIRRQEDGGPSITSDEKTRLAVKEEVLKQVQETVLFKYVDSLLANSCNRQISASVNGNTLPVIAASICCQGAEILGGKSDSSTGYWCQETHMKCLKAEDDKPITMVPETVVNGNSEHGIDVLIPSSSGKLCYSCSNPSKNISMHPAGTDVLTVLLLSLPSTTWDGITDEQLLAKIRDLVPIDNLPTLLQEEVVLQLRRQLHLLKRCQEGKVDKDLGAPFS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02226 505 Gene3D - 17 223 IPR038156 -
Cca03g02226 505 SUPERFAMILY Cysteine proteinases 15 220 IPR038765 -
Cca03g02226 505 Pfam Domain of unknown function (DUF1984) 234 485 IPR015407 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Cca03g02226 505 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 6 498 IPR040409 GO:0016756|GO:0046872|GO:0046938
Cca03g02226 505 Pfam Phytochelatin synthase 8 216 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Cca03g02226 505 ProSiteProfiles Phytochelatin synthase (PCS) domain profile. 2 224 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Cca03g02226 505 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 6 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02226 Cca-Chr3 43061227 43065191 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02226 K05941 - gmx:547627 770.77