Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02223 ATGAACATCTTCACCAAGAAACCCACCGCCAAAGAGGCTCTTCGGGAGAGTAAACGAGAAATGGCAAACGCCACTAGAGGTGTAGAGAAGGAAATTGGAGCATTACAATTGGAAGAAAAGAAACTCGTTGCTGAGATAAAGAGAACTGCTAAGACAGGAAATGAGGCAGCAACTAAAATTTTAGCTCGCCAGTTAGTCAGGCTTAGGCAACAAATTGCTAATCTTCAAGGTAGTAGAGCTCAGATGAGAGGTATAGCAACTCACACGCAGGCGATGCATGCCCATTCTTCTGTTGCTGTTGGCATGAAAGGTGCTACTAAGGCAATGGCAGCTATGAATAAGcaaatggcaccagcaaagcaagctaaaattatacaggacttccagaaacaatcagcacagatggatatgactACTGAAATGATGTCAGATGCCATAGATGATGCCTTGGATAATGATGAAGCTGAAGAGGAGACTGAAGAGCTGACGAATCAGGTGCTGGACGAAATTGGTGTGGATGTTGCCTCACAGTTATCAGCGGCTCCCAAAGGGAGGGTTGCAACAAAGAATACTGAAAATGTCAGCAGCTCGGGCATTGACGAACTTGAGAAGCGTTTGGCAGCTCTTAGGAACCCATAA 639 0.4038 MNIFTKKPTAKEALRESKREMANATRGVEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVAVGMKGATKAMAAMNKQMAPAKQAKIIQDFQKQSAQMDMTTEMMSDAIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGRVATKNTENVSSSGIDELEKRLAALRNP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02223 212 Pfam Snf7 16 185 IPR005024 GO:0007034
Cca03g02223 212 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g02223 212 Gene3D - 4 181 - -
Cca03g02223 212 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 3 2 212 - -
Cca03g02223 212 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 2 212 IPR005024 GO:0007034
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02223 Cca-Chr3 43032349 43035892 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02223 K12192 - gmx:100306343 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02223 03 43032349 43035892 Cca03g02223 03 43032349 43035892 ECH