Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02216 ATGGGGTCTCTGGCAGCGTTTCCAAGGGGGGCATCCAAACAATGCCTTAGCGGGAACAAGCACATTGATGAAAGCTCCGTGGAGGCGCTGTTCAAGTCGCAGCAGAGCCACCTGAACTACTTCTTCCACCACATCGACCACTCCCAAACCCTAGCCTTCACGCGCGCGCTCCTCGAAACCGCCGGCACCGTCTTCTTCACCGGCGTCGGCAAATCCGGCTTCGTCGCGCACAAGATCTCGCAGACGCTCGTCTCCCTCGGCGTCCGCTCCGCCTTCCTCTCGCCGGTCGATGCGCTCCATGGCGACCTCGGGATCCTCACCGACCGCGACGTCCTCGTCCTCCTCAGCAAGTCCGGCGCCACCGAGGAGCTCCACCGCCTCGTGCCGTGCGCCAGGGCCAAGGGCGCGCTCCTCATCGCGCTCACCTCCGAGGAAGGCAACGCGCTCGCCGCCAAGTGCGACATGTCCGTGCATTTGCCTCTCCAGAGAGAGCTCTGTCCGTTCAACCTCGCTCCGGTCACATCCACCGCCATTCAGATGGTGTTCGGCGACACCGTCGCCATCGCGCTCATGGAGGCAAGGAATCTCACCAAGGAGGAGTACGCCGCGAACCATCCCGCCGGCAAGATCGGGAAGAGTCTCATCTTCAAGGTGAAGGATTTGATGAAGAAGGAGGATGAGCTTCCGATTTGCAGAGAATCGGATTTGATCATGGATCAGCTTGTGGAACTGACGAGTAAAGGATGCGGATGCCTGCTTGTTATCGACGACGGTTACAGTCTGATTGGGACGTTCACTGACGGTGATCTCCGTCGTACTCTGAGAGCCAGTGGAGAAGCCATTTTCAAACTCACTGTTGGGGAAATGTGCAACAGGAAACCAAGAATAATTGGTCCGGAGGCAATGGCGGTGGATGCGATGAAGAAGATGGAGGCTCCTCCGTCGCCTGTTCAGTTCTTGCCTGTGATAAACGATCAAAATATGTTGATTGGGATAGTCACATTGCATGGTTTGGTTTCATCTGGCTTGTGA 1032 0.5746 MGSLAAFPRGASKQCLSGNKHIDESSVEALFKSQQSHLNYFFHHIDHSQTLAFTRALLETAGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDLGILTDRDVLVLLSKSGATEELHRLVPCARAKGALLIALTSEEGNALAAKCDMSVHLPLQRELCPFNLAPVTSTAIQMVFGDTVAIALMEARNLTKEEYAANHPAGKIGKSLIFKVKDLMKKEDELPICRESDLIMDQLVELTSKGCGCLLVIDDGYSLIGTFTDGDLRRTLRASGEAIFKLTVGEMCNRKPRIIGPEAMAVDAMKKMEAPPSPVQFLPVINDQNMLIGIVTLHGLVSSGL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02216 343 Gene3D - 20 212 - -
Cca03g02216 343 Pfam SIS domain 58 188 IPR001347 GO:0097367|GO:1901135
Cca03g02216 343 Gene3D - 213 340 IPR046342 -
Cca03g02216 343 CDD CBS_pair_SIS_assoc 214 339 - -
Cca03g02216 343 ProSiteProfiles CBS domain profile. 290 343 IPR000644 -
Cca03g02216 343 PIRSF KdsD_KpsF 12 343 IPR004800 GO:0005975|GO:0016853
Cca03g02216 343 CDD SIS_Kpsf 62 189 IPR035474 -
Cca03g02216 343 ProSiteProfiles CBS domain profile. 222 281 IPR000644 -
Cca03g02216 343 ProSiteProfiles SIS domain profile. 54 196 IPR001347 GO:0097367|GO:1901135
Cca03g02216 343 PANTHER - 13 343 - -
Cca03g02216 343 TIGRFAM kpsF: sugar isomerase, KpsF/GutQ family 62 333 IPR004800 GO:0005975|GO:0016853
Cca03g02216 343 SUPERFAMILY SIS domain 47 340 IPR046348 GO:0097367|GO:1901135
Cca03g02216 343 Pfam CBS domain 218 274 IPR000644 -
Cca03g02216 343 Pfam CBS domain 286 339 IPR000644 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02216 K06041 - gmx:100805755 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02216 03 42943016 42945017 Cca03g02216 03 42943016 42945017 ECH