Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02211 ATGGAGCGGTTGAAGCTTGCGCAGCTGGGGGAGAGGCTGAAGACGGGTGGGGCCCAGATGGGCCGAATGGTGAGCGGGAAAGTCAAGGAGATGCTGCAGGCGCCCACGCCGGAGTCCAAGATGGTGGAGGACGCCACGGCCGAGACGCTCCAGGAGCCCAACTGGGGCATGAATCTCAGGATATGCGCCATGATCAACAGCGACGACTTCAGCGGCTCCGAGCTCGTTAAGGCCCTCAAGAGGAGACTCACCCACAAGAGCCCCCTCGTTCAGACCCTCACCCTCGAACTCTTGGAAACCTGCGCCATGAACTGCGACAAGCTCTTCTCCGAAATCGCTTCCGAGAAGCTTCTCGACGATTTGGTTCGCTTGATGGATAACCCCCAGGCCCAGCACCACACTCGCAGACGGGCTTTTCACTTGATTCGGGCCTGGGGCGAGTCCCAGGATCTTGCCTATCTCCCTAGTTTGAAAGGAAGAGATGAAGCACTTGACATGGCTGGAGGAAATTCACCGTCTGCTCCATATACCTTGGAGTCAGATACAAATCAATATCCTGTAGACCCCCCTGAGAGATACCCGATTCCTCAAGCTGAACTTTATGAAATGGATGATTCAGCCACTTTCTCTACAAATTACCTACACATGTCGATTGAAGAGAAGAAAGAGCATCTTGTGGTTGCTCGAAACAGTCTTGAGTTGCTTTCTAGCATATTGAATTCGGAGGCAGAGCCAAAACCTTTGAAGGAAGATATAACTGTGAGCTTGTTGGACAAATGCAAGCAATCACTCTCTGTTATCAAGGGGATTGTAGAAGGCACTACAGATGATGAAGCAACGCTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAACAGGTAGTGTCAAAATATGAGGAGTTAGAAGCTGCTCAAAGTTCTGGGGCACCACCATCTCAAAATGCGGACACTGCCAAGCATGATGCGGAACTTGTTCAAAACCGCAATGAACTACCTGAAAGTGATGAATCCGAAGCTGCTCAGAATCTGGATGGAAAGCTTCCTCAAAAGTTTAACACTCTTGAAGTCAATGCAACTGAGGTGGCTGGCCTTGCCGAAACTAAAGTAGTGGATGACACAAAGGAAAAGGGTGCTGAATCTAGTTTCAAGCAAGATACCAAATGA 1164 0.4983 MERLKLAQLGERLKTGGAQMGRMVSGKVKEMLQAPTPESKMVEDATAETLQEPNWGMNLRICAMINSDDFSGSELVKALKRRLTHKSPLVQTLTLELLETCAMNCDKLFSEIASEKLLDDLVRLMDNPQAQHHTRRRAFHLIRAWGESQDLAYLPSLKGRDEALDMAGGNSPSAPYTLESDTNQYPVDPPERYPIPQAELYEMDDSATFSTNYLHMSIEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDITVSLLDKCKQSLSVIKGIVEGTTDDEATLFEALYLNDELQQVVSKYEELEAAQSSGAPPSQNADTAKHDAELVQNRNELPESDESEAAQNLDGKLPQKFNTLEVNATEVAGLAETKVVDDTKEKGAESSFKQDTK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02211 387 Pfam GAT domain 229 302 IPR004152 GO:0035091|GO:0043130
Cca03g02211 387 SMART VHS_2 38 169 IPR002014 GO:0035091|GO:0043130
Cca03g02211 387 MobiDBLite consensus disorder prediction 325 348 - -
Cca03g02211 387 MobiDBLite consensus disorder prediction 362 387 - -
Cca03g02211 387 CDD VHS 39 155 - -
Cca03g02211 387 SUPERFAMILY GAT-like domain 184 302 - -
Cca03g02211 387 Gene3D - 28 180 IPR008942 -
Cca03g02211 387 MobiDBLite consensus disorder prediction 166 187 - -
Cca03g02211 387 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Cca03g02211 387 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Cca03g02211 387 MobiDBLite consensus disorder prediction 367 387 - -
Cca03g02211 387 SUPERFAMILY ENTH/VHS domain 38 148 IPR008942 -
Cca03g02211 387 ProSiteProfiles GAT domain profile. 216 303 IPR004152 GO:0035091|GO:0043130
Cca03g02211 387 Gene3D - 218 314 IPR038425 -
Cca03g02211 387 PANTHER TOM1-LIKE PROTEIN 2 1 346 - -
Cca03g02211 387 PANTHER TOM1-LIKE PROTEIN 1 1 346 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02211 Cca-Chr3 42870364 42872483 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02211 - - gmx:100803803 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02211 03 42870364 42872483 Cca03g02211 03 42870364 42872483 ECH