Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02204 ATGGGACCAAATGCTTCATCAGGCATGGGTGTTGCTGATCACAGCAAAAATACCTTCATGGAATTGAAGCAAAAGAAGGTTCATCGTTATGTGATCTTTAAGGTTGATGAAAAGAAAAGGGAAGTTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGATGATTTTACTGCATCTTTGCCTGAAAATGATTGCAGATATGCTGTGTTTGACTTTGATTTCGTCACTTCTGAGAACTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTCCCCTTCAACATCTCGAATCCGTGCTAAGATGCTCTATGCCACAACTAAAGACAGGTTTAGACGGGAGCTAGATGGTGTTCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGCTGAGAGACCGTGCACATTGA 423 0.4279 MGPNASSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFTASLPENDCRYAVFDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKDRFRRELDGVHYEIQATDPTEMDLEVLRDRAH 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02204 140 SMART adf_2 13 140 IPR002108 GO:0003779
Cca03g02204 140 ProSiteProfiles ADF-H domain profile. 8 140 IPR002108 GO:0003779
Cca03g02204 140 PANTHER COFILIN-RELATED 2 140 IPR017904 GO:0015629|GO:0030042
Cca03g02204 140 SUPERFAMILY Actin depolymerizing proteins 5 140 - -
Cca03g02204 140 CDD ADF_cofilin_like 7 139 IPR017904 GO:0015629|GO:0030042
Cca03g02204 140 Gene3D Severin 4 140 IPR029006 -
Cca03g02204 140 Pfam Cofilin/tropomyosin-type actin-binding protein 16 137 IPR002108 GO:0003779
Cca03g02204 140 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 2 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02204 Cca-Chr3 42816680 42819613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02204 K05765 - gmx:100819975 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02204 03 42816680 42819613 Cca03g02204 03 42816680 42819613 ECH