Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02190 ATGTCGAACCCTCAAAATCAGAAACCATGGAAGGCGGAATACGCGAAGTCGGGGAGATCATCATGCAGGACGTGCAAGTCCCCCATTGCCAGCGAAACGCTGCGTCTCGGCAAGATGGTTCAGTCGTCCAAATTCGATGGCCTCATGCCGATGTGGAATCATGCTGCTTGCATATTGAAGAAAGCCAATCAGATAAAATTAGTTGAAGATGTTGAAAACATAGAATCGCTTCGTTGGGATGATCAGCAGAAGATCAGAAAATACATAGAGAGTGGCactgggactgggactgggactgggaGCGGGAGCGCGTCAAAGTCAAATTCAAAGGCTGTCAAAGATACTGAATGTGGTATTGAAGTTTCACAAACTTCTCGTGCTACTTGCAGGGATTGCGGTCAAAAAATCATCAAAGGAGAGGTTCGAATATCTACCAAGCCTGATGGTCAAGGTGCTAGAGGATTGGCTTGGCACCATGCCAAGTGTCTTGTGGAACTATCACCATCAATTCAAGTGGATAAATTATCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAACTGTCAGTGACTTGGCTAAGAAGGGTCATTCTCTGACTAAGGGGGGTGGTAGTGGTATAAACATCAAGACTGAAGAGGGTAAAGAATCCACACAACACACTTCCAAAGGTGGCATAAAACGGGGCAAGGATGCTGATGGTGAACGGAAATCAAAGGTTGCTAAGGCCAAGGGAGATGTGTCTGCAAGCAGCACAGCATCAGTAAAGAATGAACCAGGGGAAGCACGGGACCTGGAAAATAGACTGGAGGCGCAAAGCAAAGAACTCTGGGCTCTGAAGGATGATATCAAAGAGCATGTGACAACAGCAGAGTTGCGTATAATGCTGGATGCCAATGGTCAAGATTCAACTGGATCAGAACTTGATTTGCGTGACCGCTGTGCTGATGGAATGATGTTTGGAGGACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGGTGCAATGGATACATTTCCGAGTGGAGTAGATGTTCTTACTCTACCTGCGAACCAAAACGGAATGAAGGAAAGTGGAAAATCCCAGAGGAAACAAATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATTACTGCTAGTCAGCATCAATCATCAAACACTGAAAATTTGCAAGATTTGAAAGTTTCTATCTGTGGATTACCTAATGACTCTATTGAGGAATGGAAATGCAAAATTGGAGGTATAGGTGGGGTGTTTCATGCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAACACTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGGGAGGACTATTTGATTGACTGCTTAGAAAGAAAGAAGAGACTTCCATTTGATATGTATAAGGTTGAAATGATTGGTGAGGCTTCTAGTATGGTTACAATTAAAGTGAAGGGTCACAGTGCTGTTCACGAGGCCTCTGGCCTACAGGATTCTGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGACTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGTTATGTGTTTCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGAAGTAAACTGGAGGAAATGTCAAAACCTGATGCAGTCTGTGAATTCAAACGATTATTCTATGAGAAAACTGGAAACCCCTGGGAGGCGTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGAGTTAACAAACAGGTCTCAAAAAAGAAAAAAAATGATGCTGACAGCAAACTACCCCCTCCATTAATAGAATTGATAAAGATGCTCTTCAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATTCAAAGGGGGTTTGAAGCATTGACAGAGATACAGAATCTGTTAAAAAATGGCAATCCTGATCCATCTGTCAAGGAAAGCTTGCTTATTAATGCCAGCAACCGGTTCTTCACCATGATCCCTTCTATTCATCCACATATTATAAGGGATGAAGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAGATAGCCTCAAGATTGGTTGGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTTCTCATGATAGTGAAGATTTTTGTTTAATTGAGAAATTTCTCCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGAAAAACTTGGTAACAGAATGCTCCTATGGCATGGCTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCGGCAACTGGCTATATGTTTGGCAAAGGAGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAATGTCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCACTTGAATCAGAATATGCAAAGTGGAGGGGCGATGTCACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGAGTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA 3015 0.4146 MSNPQNQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSSKFDGLMPMWNHAACILKKANQIKLVEDVENIESLRWDDQQKIRKYIESGTGTGTGTGSGSASKSNSKAVKDTECGIEVSQTSRATCRDCGQKIIKGEVRISTKPDGQGARGLAWHHAKCLVELSPSIQVDKLSGWNSLSSSDQSTVSDLAKKGHSLTKGGGSGINIKTEEGKESTQHTSKGGIKRGKDADGERKSKVAKAKGDVSASSTASVKNEPGEARDLENRLEAQSKELWALKDDIKEHVTTAELRIMLDANGQDSTGSELDLRDRCADGMMFGGLGLCPICSGFLRYSGGMYRCNGYISEWSRCSYSTCEPKRNEGKWKIPEETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQITASQHQSSNTENLQDLKVSICGLPNDSIEEWKCKIGGIGGVFHAKVKKDTNCLVVGGTLNDEAEMRKARRMKIPIVREDYLIDCLERKKRLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGSKLEEMSKPDAVCEFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKKKNDADSKLPPPLIELIKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQRGFEALTEIQNLLKNGNPDPSVKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLSHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYREKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPLESEYAKWRGDVTVPCGKPVPSNVKSSELMYNEYIVYNTAQVKMQFLLKVRFHHKR 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02190 1004 PIRSF NAD_ADPRT 3 1004 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Cca03g02190 1004 ProSiteProfiles WGR domain profile. 533 632 IPR008893 -
Cca03g02190 1004 CDD parp_like 655 999 - -
Cca03g02190 1004 SMART PADR1_2 310 363 IPR012982 -
Cca03g02190 1004 PANTHER DNA LIGASE 50 998 - -
Cca03g02190 1004 Gene3D - 644 788 IPR036616 GO:0003950
Cca03g02190 1004 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 117 197 IPR001510 GO:0003677|GO:0008270
Cca03g02190 1004 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 655 789 IPR036616 GO:0003950
Cca03g02190 1004 ProSiteProfiles PARP alpha-helical domain profile. 654 772 IPR004102 GO:0003950
Cca03g02190 1004 Gene3D - 789 1004 - -
Cca03g02190 1004 MobiDBLite consensus disorder prediction 90 109 - -
Cca03g02190 1004 SMART WGR_cls 544 627 IPR008893 -
Cca03g02190 1004 MobiDBLite consensus disorder prediction 392 416 - -
Cca03g02190 1004 MobiDBLite consensus disorder prediction 180 265 - -
Cca03g02190 1004 SUPERFAMILY BRCT domain 416 504 IPR036420 -
Cca03g02190 1004 Gene3D BRCT domain 409 511 IPR036420 -
Cca03g02190 1004 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Cca03g02190 1004 SMART zf_PARP_3 120 194 IPR001510 GO:0003677|GO:0008270
Cca03g02190 1004 Coils Coil 262 282 - -
Cca03g02190 1004 CDD WGR_PARP1_like 534 639 - -
Cca03g02190 1004 Pfam Poly(ADP-ribose) polymerase catalytic domain 799 1000 IPR012317 GO:0003950
Cca03g02190 1004 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 97 - -
Cca03g02190 1004 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Cca03g02190 1004 SUPERFAMILY WGR domain-like 512 637 IPR036930 -
Cca03g02190 1004 MobiDBLite consensus disorder prediction 180 194 - -
Cca03g02190 1004 MobiDBLite consensus disorder prediction 213 243 - -
Cca03g02190 1004 ProSiteProfiles BRCT domain profile. 414 504 IPR001357 -
Cca03g02190 1004 SUPERFAMILY ADP-ribosylation 788 1003 - -
Cca03g02190 1004 Pfam PADR1 (NUC008) domain 312 361 IPR012982 -
Cca03g02190 1004 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 998 - -
Cca03g02190 1004 MobiDBLite consensus disorder prediction 400 416 - -
Cca03g02190 1004 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Cca03g02190 1004 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 120 191 IPR001510 GO:0003677|GO:0008270
Cca03g02190 1004 Gene3D - 322 382 IPR038650 -
Cca03g02190 1004 SMART BRCT_7 416 494 IPR001357 -
Cca03g02190 1004 Gene3D - 111 208 IPR036957 GO:0003677|GO:0008270
Cca03g02190 1004 Gene3D - 2 110 IPR036957 GO:0003677|GO:0008270
Cca03g02190 1004 Gene3D - 248 321 - -
Cca03g02190 1004 Pfam Poly(ADP-ribose) polymerase, regulatory domain 655 785 IPR004102 GO:0003950
Cca03g02190 1004 Pfam WGR domain 544 622 IPR008893 -
Cca03g02190 1004 ProSiteProfiles PARP catalytic domain profile. 779 1004 IPR012317 GO:0003950
Cca03g02190 1004 Pfam BRCA1 C Terminus (BRCT) domain 418 491 IPR001357 -
Cca03g02190 1004 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02190 Cca-Chr3 42608461 42618707 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02190 K24070 - gmx:100800968 1822.75