Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02171 ATGGCAACCATCATCGCCGGCACCGCAACAACATCGATCACTCGCGCAGGTCTTGTGCTCAAGCGACCTGCTGGGATCTCATCCTCTACGGTTCTTGGGTTGCCAGCAATGGGTAAGGCAGGGAGAGTGAGGTGTTCCATGGAGGGAAAGCCTTCTGCTGAAAGCAACTCAAATATTGGAATGGGGGCATCCTTGATAGCAGCTGCATGCGCCGCCACAATGTCAAGCCCAGCCATGGCTCTGGTGGACGAGAGATTGAGTACTGAAGGAACTGGGCTTCCCTTTGGGCTGAGCAACAACCTTCTTGGTTGGATCCTATTCGGTGTCTTTGGTCTCATATGGGCTCTCTATTTTGTCTATGCTTCCTCTCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTCTAA 405 0.521 MATIIAGTATTSITRAGLVLKRPAGISSSTVLGLPAMGKAGRVRCSMEGKPSAESNSNIGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASSLEEDEESGLSL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02171 134 Pfam Photosystem II reaction centre W protein (PsbW) 1 134 IPR009806 GO:0009507|GO:0009523|GO:0015979
Cca03g02171 134 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 134 - -
Cca03g02171 134 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 134 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02171 Cca-Chr3 42320849 42322297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02171 K02721 - gmx:100306223 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02171 03 42320849 42322297 Cca02g01069 02 27655589 27656635 PCT