Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02145 ATGGCGTCGTTGATATCAGATTTGCTCCGTCAAACTGGTGGCACCGCCGTCATCGACGGCGGTCTGGCGACGGAGCTGGAGCGCCATGGCGCGGACCTCAACGACCCACTTTGGAGCGCCAAATGCCTCTTTTCCTCCCCTCATCTCATTCGCCAAGTGCACCTCGATTACCTGGAAAACGGCGCAGACATTATAATCACAGCATCTTATCAAGCCACAATTCAAGGTTTTAAAGCCAAAGGCTTTTCTCAAGAGGAAAGTGAAACTATGCTCAGAACAAGTGTTGAAATTGCTCGCGAGGCACGTGAGGTGTACTATGAAAGATGTGCTGGATGCTGTTCGGGTGATGGTGCCCAAGGTAGAATCCTCAAAAAACGACCTATCCTGGTTGCGGCATCAGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGAGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAACTCTAAAAGATTTTCATCGGAGAAGAGTTCAAATTTTAGCAGATTCGGGTCCTGACCTACTTGCTTTTGAAACAGTGCCCAATAAGCTTGAAGCTGAGGCTTATGCTCAGCTTCTGAAAGAGGAGGACATAAAGATTCCAGCGTGGTTTTCTTTTAACTCTAAGGATGGAGTTAATGTTGTTAGTGGCGATTCTTTAATGGAATGTGGCTCTATTGCTGAATCATGTAATAAAGTTGTTGCTGTTGGAATCAATTGTACCCCGCCTAGATTTATACATGGTCTGATAGTTATGCTTAAGAAGGTGACTACAAAACCAATTGTTATATATCCGAACAGTGGGGAAACTTATGATGCTGACCTAAAGGAGTGGGTGCAAAATACTGGTGTTACAGATGAAGATTTTATCTCGTATGTAAATAAATGGTGCGAATTAGGGGCTTCTCTTGTAGGTGGTTGTTGCAGAACTACTCCAGCTACTATTAGGAAGATATACAGGGCACTGTCTAGCAGTCAATCTGCTACTCTTGCCACAAAGTGA 1014 0.4507 MASLISDLLRQTGGTAVIDGGLATELERHGADLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGFSQEESETMLRTSVEIAREAREVYYERCAGCCSGDGAQGRILKKRPILVAASVGSYGAYLADGSEYSGDYGDAITVETLKDFHRRRVQILADSGPDLLAFETVPNKLEAEAYAQLLKEEDIKIPAWFSFNSKDGVNVVSGDSLMECGSIAESCNKVVAVGINCTPPRFIHGLIVMLKKVTTKPIVIYPNSGETYDADLKEWVQNTGVTDEDFISYVNKWCELGASLVGGCCRTTPATIRKIYRALSSSQSATLATK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02145 337 SUPERFAMILY Homocysteine S-methyltransferase 12 328 IPR036589 -
Cca03g02145 337 Pfam Homocysteine S-methyltransferase 17 325 IPR003726 -
Cca03g02145 337 PANTHER ZGC:172121 2 332 - -
Cca03g02145 337 Gene3D - 5 324 IPR036589 -
Cca03g02145 337 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 2 2 332 - -
Cca03g02145 337 ProSiteProfiles Homocysteine-binding domain profile. 4 326 IPR003726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02145 Cca-Chr3 41988116 41992477 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02145 K00547 - gmx:100790567 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02145 03 41988116 41992477 Cca03g02145 03 41988116 41992477 ECH