Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02143 ATGCTTGCAATAAGAAAGCTCAAAACAGGACCTGATATCCCTTTTGTTTTATGTGTCACGGTTGCTAATTGCAATTATGGTACGGTCCGAGTTTCCAATAGCAAAAATGTCCGGTCTATTGTGAAGTCTGTTGGCTCTTGTTCAGCCAGCTCAAGTTCGCAAGCATTTCTACTGGGATTGGAGAATAAACATACTCTTCAGGGACTATATTTCTCTAGTGTGACTGAAAGGATCCTAGTCCAGGCTCGAGATCCTGCCAAAGTTAGTTTGGAAATTCTGGATGCTATTAGTGTGAATCAATTAGATTATTCATGGAAATTATTGGAGCAGCATATGCACATGGAGGGATTTCCCAGAAAATCTGTCATTAGCAAGCTCATAACAAGTTATGTGGACAGCCATGATGTGCAGTGGCTAGGAAAAGCTTATGAATTGGTAGAACGTGCTATTGAGGAAGGTAAGCAAGACTTGTTAGAAAAGGAAGTGCTTATCTACCTTAGCTTTGGCCTTGCAAAAGCAAGATTACCAGTTCCAGCATCCACCATTTTAAGAAAGATGATAGATATGGAGCATTTTCCCTCGGTCACCGCCTGGTCAGCAGTTTTGGCACACATGTCACAAACAGCAGAGGGAAGCTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTAGATCCACGTAAAAAGAGCAATGCACCTATGATAGCCATGAAACCAAACACTGCTTCTTTTAACATTGCGTTGGCAGGGTGCCTCTTATTTGAGACATCTAGGAAGGCTGAGGAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGTTGATGCAAACTTACTGATAATAATGGCACGTATATATGAGAGAAATGGACGAAGGGAAGAGCTCAAGAAGCTGCAGAGGCACATAGAGGAAGCTCCAAATCTAACTGATTTACAATTCCGACAGTTTTATAATTGTTTGCTGACATGCCATTTGAAATTTGGGGATCTAGATTCTGCAGCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTACCAAATTTATGATAACTGCTGCTAAAATTGATCATAACCATTCTCCTGGACGGGCTTCTGTGCATAGTTTGAACAACAGTAATGATTTTGATAGTTTAGAAAACAAGCCAATTACAAATGCTGTAATATCTTACGAGGAGTTCTCTAAAGATAGAAATTTCTCAAAGCTTGAAGCAGTGTCAAATGCTGTACTTGGTTCTTTATTAGCTAAGTTGCAGATGCAGGTGGACTTGATTACCACCAAACATGGTATACTGCAGCCAACTGAAACAATTTATGTGAAATTAGTTAAAGCTTTTCTAGAAGCTGGCAAGACCAAGGATTTAGCTGTGTTTCTTCTGAAGGCAGAAAGAGACGATTCTCCGTTTTCCAATGACAACTCAGCCTTGGTTCATGTTATTAATGCTTGCATTTCACTTGGATGGCTGGATCAAGCACACGATCTCCTTGATGAGATGCGTCTAGCCGGAGTTAGAACTGGTTCATCCGTATACTCCTCACTTTTGAAAGCATATTGCCGAGCAAATAGGACCACAGATGTGACGTCACTTCTGAGAGATGCTAGGATAGCCGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCGAGGGTGCTCCAGCAAGACACACATGGAGCACTCAAACTATTCAAAGAGAGGAAAGAAGCTAGAATTCCAAAAGTCACTCAACAAAACTCTGGCATGATGGCTAAAAGTGGTGCCGAGACAGATGAAGCTGGACTGATGACCAAGCTGTTACAGGAAATCAAGGAAGGGCAGAGAGTGGATTATGGAGTTCATGACTGGAATAATGTGATCCACTTTTTTTGCAAGAAGAGACTCATGCAAGATGCAGAAAAGGCTCTAAAGAAGATGAGAAGCTTAGGCCACTCGCCGAATGCGCAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTATTGGAGGGAATTATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAAGCTCTTGCTTCTTCTATCTCCATGAAGTTTGATCAGGAACTTCTTGATTCTGTGCTGTATACATTTGTAAGAGGTGGATTCTTCGTTCGAGCCAATGAAGTTGTGGCAACAATGGAAAAAGGAAATATGTTTGTTGACAAGTACAAGTACCGAATGCTGTTCTTGAAATATCATAGAACACTTCACAAAGGCAAGGCTCCTAAATTTCAGACAGAATCCCAACTAAAGAAAAGAGAAGCAGCCCTCGCTTTTAAAAGGTGGATAGGCTTGAATTGA 2352 0.4137 MLAIRKLKTGPDIPFVLCVTVANCNYGTVRVSNSKNVRSIVKSVGSCSASSSSQAFLLGLENKHTLQGLYFSSVTERILVQARDPAKVSLEILDAISVNQLDYSWKLLEQHMHMEGFPRKSVISKLITSYVDSHDVQWLGKAYELVERAIEEGKQDLLEKEVLIYLSFGLAKARLPVPASTILRKMIDMEHFPSVTAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRVDPRKKSNAPMIAMKPNTASFNIALAGCLLFETSRKAEELLDMMPRIGVKVDANLLIIMARIYERNGRREELKKLQRHIEEAPNLTDLQFRQFYNCLLTCHLKFGDLDSAANMVLEMLRKAKEARNSLAATKFMITAAKIDHNHSPGRASVHSLNNSNDFDSLENKPITNAVISYEEFSKDRNFSKLEAVSNAVLGSLLAKLQMQVDLITTKHGILQPTETIYVKLVKAFLEAGKTKDLAVFLLKAERDDSPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRTTDVTSLLRDARIAGIQLDSSSYEAMIQSRVLQQDTHGALKLFKERKEARIPKVTQQNSGMMAKSGAETDEAGLMTKLLQEIKEGQRVDYGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAAIGGNYQEVTELWGEMKALASSISMKFDQELLDSVLYTFVRGGFFVRANEVVATMEKGNMFVDKYKYRMLFLKYHRTLHKGKAPKFQTESQLKKREAALAFKRWIGLN 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02143 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Cca03g02143 783 Gene3D Tetratricopeptide repeat domain 406 597 IPR011990 GO:0005515
Cca03g02143 783 Gene3D Tetratricopeptide repeat domain 169 389 IPR011990 GO:0005515
Cca03g02143 783 Gene3D Tetratricopeptide repeat domain 598 780 IPR011990 GO:0005515
Cca03g02143 783 TIGRFAM PPR: pentatricopeptide repeat domain 632 664 IPR002885 -
Cca03g02143 783 TIGRFAM PPR: pentatricopeptide repeat domain 524 556 IPR002885 -
Cca03g02143 783 Pfam PPR repeat family 630 675 IPR002885 -
Cca03g02143 783 Pfam PPR repeat 493 518 IPR002885 -
Cca03g02143 783 Pfam PPR repeat 324 350 IPR002885 -
Cca03g02143 783 PANTHER BNAC05G43320D PROTEIN 15 782 - -
Cca03g02143 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 662 IPR002885 -
Cca03g02143 783 Pfam Pentatricopeptide repeat domain 543 588 IPR002885 -
Cca03g02143 783 PANTHER OS10G0422566 PROTEIN 15 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02143 Cca-Chr3 41954151 41956502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02143 524 758 Miscellaneous Gene Families AT4G11690 20.168 2.14e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02143 - - gmx:102661989 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02143 03 41954151 41956502 Cca03g02143 03 41954151 41956502 ECH