Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02141 ATGGAACAGCTGAGATTCACAGCTTTTCAAATAGGAGTGATACTAGCAGCTCTTGTTGTGGCTTCAGCAAAATTGGTTAATGGGCAAATTAGTACATCATGCACAACCTCTATGATGAGTAGTTTCACACCATGTGCCAACATCATCACAGGAAGCACTAATAATAATGGTTTGACTCCACCAAGCACTTGTTGTGATTCATTAAGGTCTTTGATGAGCACTAACATGGATTGTGCTTGCTTGATGATCTCTGCCAATGCTCCTTTTTTCCAACTACCCCTTAGCCAAGCTCTTGCTCTCTCTCTTTCACAGGCGTGCAACATTAATGGAGTTTCTTTACAGTGCAAAGCTTCTGGTTCTCCTTTATCGGCTCCAGGCCCTGCAGTTCTTGGATCGAGCGGCCCAACTCTCCCTTCAATTGCTACTTCTCCATTGAGCCCACAAGTTTCAAAAATAGTGGCTCTGGAGGAAGCAGAGAAATATGAGAAAGTAGAATTGGCAGCAGCTTCATCTCCGGTGGAAGCAGAAGTGCCAACTAGAATTCCACAAATCCGACCAGTGTTGACTCCACGTCCTTCTGCATCTCCTTCATCTTATGTCTCCCCATCACCTTTTGCATTCCTCATAGGAATCATGGTTTTTGGCATCTATTAA 654 0.4404 MEQLRFTAFQIGVILAALVVASAKLVNGQISTSCTTSMMSSFTPCANIITGSTNNNGLTPPSTCCDSLRSLMSTNMDCACLMISANAPFFQLPLSQALALSLSQACNINGVSLQCKASGSPLSAPGPAVLGSSGPTLPSIATSPLSPQVSKIVALEEAEKYEKVELAAASSPVEAEVPTRIPQIRPVLTPRPSASPSSYVSPSPFAFLIGIMVFGIY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02141 217 Gene3D - 31 112 IPR036312 -
Cca03g02141 217 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 38 112 IPR036312 -
Cca03g02141 217 Pfam Probable lipid transfer 17 115 IPR016140 -
Cca03g02141 217 SMART aai_6 34 115 IPR016140 -
Cca03g02141 217 PANTHER CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE 12 214 - -
Cca03g02141 217 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 214 IPR043325 -
Cca03g02141 217 CDD AAI_LTSS 42 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02141 Cca-Chr3 41945934 41948243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02141 18 126 Lipid Metabolism Gene Families AT2G48140 49.107 4.44e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02141 - - gmx:100786841 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02141 03 41945934 41948243 Cca03g02141 03 41945934 41948243 ECH