Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02138 ATGGAATCGGAACCGAAGAAGGAAACCGAAGTGGCTCCGGCTCTCAtcgccgtccaccccgaccagtcctccgtcgccgtcgccgtcgGCCCCCACCTCCGCGTCTTCGATCTCCTTGCCGGTTCCGCAGCCTCCTTAATTGACGACTCCGACGCCGTTCCCTTCCACAAGGACAACATCAGAGCCATTCGCTTCGGCGCCAGCGGAAAACTCTTAGTCTCCGCCGGTGACGATAAAACCGTCAAGGTCTGGTCAACGCAGTCGTGGCGCTGCATCACCACCGTGTCCTCCGAGAAGAGAGTAACCGCTGTTGCCGTTAGCAACGACGGAACCTTCGTGTGCTTCGCGGATAAGTTCGGCCTTGTTTGGGTCGTCGATCTCGATCCACCGTTGCGCGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGCTTTATTTTAAGTGCTGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCAACAAGCCCTTGAATGGAGCTCACCAGATACAGAGTTTTTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGTCTCAGGAGTGCCCTCAAGGTCTTCTTGTCTCTGGAAGTGGTGATTCCACAGTTCGGTTGTGGGATATCACCTCTGGAGCACTCTTAGATACCTGTGAGGTTGCAATTAAGGCAGGACTTTTAGAGTCTAATGGCAAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTATGCACCATCCAGGATGGTTTGCTTGTTGCAGTAGCCATTCAGAGTTTGCAAGGAATAGTATTGTTGAATTGCAATGTTTCAGCACAAACTCTCTCTCTTGCAAAGGTAATGGCTGTTATTGTAAACACATGCTTGAAATGA 918 0.4706 MESEPKKETEVAPALIAVHPDQSSVAVAVGPHLRVFDLLAGSAASLIDDSDAVPFHKDNIRAIRFGASGKLLVSAGDDKTVKVWSTQSWRCITTVSSEKRVTAVAVSNDGTFVCFADKFGLVWVVDLDPPLRDKKPAPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPNKPLNGAHQIQSFCLGHTEFVSCLAFIQSQECPQGLLVSGSGDSTVRLWDITSGALLDTCEVAIKAGLLESNGKAEEHGHAVTDLCTIQDGLLVAVAIQSLQGIVLLNCNVSAQTLSLAKVMAVIVNTCLK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02138 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Cca03g02138 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Cca03g02138 305 SMART WD40_4 46 85 IPR001680 GO:0005515
Cca03g02138 305 SMART WD40_4 133 172 IPR001680 GO:0005515
Cca03g02138 305 SMART WD40_4 180 224 IPR001680 GO:0005515
Cca03g02138 305 SMART WD40_4 88 126 IPR001680 GO:0005515
Cca03g02138 305 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Cca03g02138 305 SUPERFAMILY WD40 repeat-like 16 270 IPR036322 GO:0005515
Cca03g02138 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Cca03g02138 305 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 305 IPR028884 GO:0036265
Cca03g02138 305 Gene3D - 97 284 IPR015943 GO:0005515
Cca03g02138 305 PANTHER WD40 REPEAT PROTEIN 4 14 298 IPR028884 GO:0036265
Cca03g02138 305 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Cca03g02138 305 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Cca03g02138 305 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Cca03g02138 305 Gene3D - 12 96 IPR015943 GO:0005515
Cca03g02138 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02138 56 268 Miscellaneous Gene Families AT5G08390 25.333 9.67e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02138 K15443 - gmx:100786310 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02138 03 41929172 41932409 Cca03g02138 03 41929172 41932409 ECH