Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02125 atggaccttctgaagcaagagcttctcaagaagcgccaatctctagcccaagacaccggcggcaagagattcttcaagcgctccgaaatccagcagaaggagatccaaaagctccgcgagcaagagaagcgcgagttggaagccaagtcccaaaagcgcctcgccacgtcctccgacgccgccgcagcctccgccacctcggcttcctccgcttcagcgtccgcctcctccgccgtggccgccgccacggcctccctcaccgacgagcagaacatcgacaacctcgtcctcccgaagcccgaggtcgtgcgccgcttgcgcttcctgaagcagccggtaacgctcttcggcgaggacgatgacgcgcggctggagcgtctgaagcacgtgctcaaggccggcgagttcgaggtcgacagcgacatgacggaggggcagaccaacgactttctgcgcgacatcgcggagctccggaagcgccagaagacggggctcatgggcgagaggaagcgccagaagaacgacgacggcgctgccgaggaccgcgagggaggaggcgccgacgacgatctcagcgagggcggcgggtccagcggcgccgacgccgacaaggacttgaagcggatgaaggcgaatttcgaggagctctgcgatgaggataagattttggtgtttttcaagaggctgttgaatgagtggaagcaggagttgcacgagatggctgaggcggagaagcgcacggctaaggggaagtccatggtcgccacgttcaagcagtgcgcgcgttacttgaacccgctgttcaagttttgtaggaagaaggttcttcccgacgacattcgacaggcgctgatgatagtggttgagtgctgtatgaagcgagattatctagctgcaatggatcattatatcaagctggccatagggaatgcaccctggcctattggtgtcactatgCGGGAGTACAGATGGAAGGACGTGAGCCATGTGATGGTCCACGTGGCGCTAAGGCGAGAAGCACCGGCACTGAAACGCATAGGATCTATATGCGTCCTCCACAGTGCATCGTCAGCAACCTCAATGGCGAAGCGTCCCTGTCCCTCGCAAAACCCTAGAGTCGATAACCTGAACGATGTGGAGCGTCTTCTCGACGCctttctctccctctccgacctcccttctctctccctcgatctctcCTTCGAGAGGCTTCTCCACTCACTTCCCCCCGACTCCGACCTCATCGATCGCGCCCTCAAAATGGGCTCTCTCCTCCTCGACGCCGCCAAACACTCCTCCAGAAAACGCGCTTCCAACCACAATTCCCTCGCCTGGCCTCTCCCTCCCGACCTCACCATCAAGGTCTTCTCAATGCTTGATACCCAGAGCCTCTGCTATGCGTCAGCTACTTGTTCACTTTTTAGCAAATGTGCTAAAGATCCTCTGTGCTATGCAAATCTTGATTTGACAACCCTTGTTCCGAAGGTTAACAATGCAGTTGTTGCAACGATGATTCAGCGTGCTGGAAAGGCACTAAGGTCTCTTAAGCTGGGTGTTGTCCCTGGCGCTACTACACTTGGATCTTGTCCGCCATTTGTTTGTACCATCAGACATTCTATTGTAGAAGTATCTAACTTTTCATGGAATGATAAGAGATCTCGACAAGGGAGAGAGTCATCCATTCTCACAAGATGCTGTTTGAGCCCTTTAAGTGGGGATGGTGGTGCCCCCGGGGCTCTTTTGAGAAAGTTGCACTTGTACAACATCGAGAGAATGGATAATGCATCCCTTAGTGTGGCATTGTCAGCATGCCCTTCTCTCCTTGATTTGGAAATTGTTGGGCTCCATGTTGAGCTGAGGCAAACGTTAATGTCAGTGAGTGCAAACTGCCACTTGATAGAGCGTTTGTTTTTTGAGTCTTCTAAAACAGGTAGAGACGACAGCTTGAAAGCACAAACGTGTTTTGAGCTAGTAAGCAGTTGTCCTCATCTTACTTCTTTATCCCTTAGAGGGTTTAAGCTACACGATTGTAAAGTTCGCGTACTGGTTAAGGGATTTAGGAAACTAAAATATGTTGACTTTTCAACATCCTATTCAATCACTGGTAACTTCTTAAGAAACCTTGGAAGCTGCAATGGTGGGAATTTACTCGAGGTCTTAATTTTAAGGGATTGCATGCATCTCAAAGAGATGGAAGTCGCTAGGCTGTTGACTGCAATTCTTGCTGGAGATTTCAAATTGCTTGTACATCTTGACATATCCAATAGGGAAGGCTTAGCATCCGAGTCTGACTGGTATCACAGGTGCTACAACTCTAGTTACATTGAGAGCTTCGACGCTGATATGAATAGTGAGATAAGTCTGCCATCACAATTGAGCAGCCACACGTCAGATGGATCAATTTTTTTGAGTACATCTGAAAGCAGCTACAATAGTGATCAAGGAAGTGGCAATGAGGATGGTCAAGATGCCAACTACGTGATATATGAGGAAAGCTCAGATGAGATTGACTTTCTGCCCCTATAG 2526 0.2803 MDLLKQELLKKRQSLAQDTGGKRFFKRSEIQQKEIQKLREQEKRELEAKSQKRLATSSDAAAASATSASSASASASSAVAAATASLTDEQNIDNLVLPKPEVVRRLRFLKQPVTLFGEDDDARLERLKHVLKAGEFEVDSDMTEGQTNDFLRDIAELRKRQKTGLMGERKRQKNDDGAAEDREGGGADDDLSEGGGSSGADADKDLKRMKANFEELCDEDKILVFFKRLLNEWKQELHEMAEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMIVVECCMKRDYLAAMDHYIKLAIGNAPWPIGVTMREYRWKDVSHVMVHVALRREAPALKRIGSICVLHSASSATSMAKRPCPSQNPRVDNLNDVERLLDAFLSLSDLPSLSLDLSFERLLHSLPPDSDLIDRALKMGSLLLDAAKHSSRKRASNHNSLAWPLPPDLTIKVFSMLDTQSLCYASATCSLFSKCAKDPLCYANLDLTTLVPKVNNAVVATMIQRAGKALRSLKLGVVPGATTLGSCPPFVCTIRHSIVEVSNFSWNDKRSRQGRESSILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNASLSVALSACPSLLDLEIVGLHVELRQTLMSVSANCHLIERLFFESSKTGRDDSLKAQTCFELVSSCPHLTSLSLRGFKLHDCKVRVLVKGFRKLKYVDFSTSYSITGNFLRNLGSCNGGNLLEVLILRDCMHLKEMEVARLLTAILAGDFKLLVHLDISNREGLASESDWYHRCYNSSYIESFDADMNSEISLPSQLSSHTSDGSIFLSTSESSYNSDQGSGNEDGQDANYVIYEESSDEIDFLPL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02125 841 MobiDBLite consensus disorder prediction 53 82 - -
Cca03g02125 841 Pfam F-box-like 447 489 IPR001810 GO:0005515
Cca03g02125 841 SUPERFAMILY F-box domain 434 492 IPR036047 GO:0005515
Cca03g02125 841 Coils Coil 226 246 - -
Cca03g02125 841 MobiDBLite consensus disorder prediction 162 189 - -
Cca03g02125 841 Gene3D Ribonuclease Inhibitor 440 771 IPR032675 -
Cca03g02125 841 SUPERFAMILY PRP4-like 91 132 IPR036285 -
Cca03g02125 841 Coils Coil 32 52 - -
Cca03g02125 841 Pfam pre-mRNA processing factor 4 (PRP4) like 102 128 IPR014906 -
Cca03g02125 841 Gene3D Functional domain of the splicing factor Prp18 198 357 - -
Cca03g02125 841 MobiDBLite consensus disorder prediction 40 82 - -
Cca03g02125 841 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 369 776 - -
Cca03g02125 841 Pfam Prp18 domain 224 320 IPR004098 GO:0005681|GO:0008380
Cca03g02125 841 SUPERFAMILY Functional domain of the splicing factor Prp18 200 350 - -
Cca03g02125 841 PANTHER F-BOX SKIP17-LIKE PROTEIN 369 776 - -
Cca03g02125 841 SMART pr04_2 97 148 IPR014906 -
Cca03g02125 841 Gene3D - 68 148 IPR036285 -
Cca03g02125 841 SUPERFAMILY RNI-like 576 775 - -
Cca03g02125 841 MobiDBLite consensus disorder prediction 162 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02125 Cca-Chr3 41712157 41724326 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02125 K10268 - gmx:100786317 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02125 03 41712157 41724326 Cca03g02125 03 41712157 41724326 ECH